FMO05231.5prime Sequence
683 bp (683 high quality bases) assembled on 2008-08-22
> FMO05231.5prime
GTATAGCATACACCTATACGAAGTTATCAGTCGACATGGATTTATACTAT
AGACCCGGATCTGCTCCCTGCCGCTCTGTTCTGATGACAGCCAAGGCACT
GGGTGTGGAGTTCGATAAGAAGACCATTATCAACACCCGAGCTAGGGAGC
AATTCACGCCGGAATACCTGAAAATCAATCCGCAGCACACGATCCCCACG
CTGCACGACCATGGATTTGCTTTGTGGGAGTCGCGGGCGATTATGGTTTA
TCTGGTGGAGAAGTACGGCAAGGACGACAAGCTCTTCCCCAAGGATGTGC
AAAAGCAGGCGTTGATCAATCAGCGCCTGTACTTCGACATGGGTACGCTG
TATAAGAGCTTCTCCGAGTACTATTATCCGCAGATTTTCCTAAAGAAGCC
CGCCAATGAGGAGAACTACAAGAAGATCGAAGTGGCCTTCGAATTCCTAA
ACACATTCCTGGAGGGGCAGACCTACAGCGCTGGAGGGGATTATAGCTTG
GCGGATATTGCCTTTCTGGCCACCGTTTCCACTTTCGATGTGGCTGGCTT
CGATTTCAAGCGGTATGCCAATGTGGCACGTTGGTACGAGAATGCCAAGA
AACTGACTCCCGGTTGGGAGGAAAACTGGGCTGGTTGCCAGGAGTTCCGC
AAATACTTCGATAACGCAAGCTTTCTAGACCAT
FMO05231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD10-RB | 876 | CG18548-RB | 107..736 | 36..665 | 3150 | 100 | Plus |
| GstD10-RA | 852 | CG18548-RA | 83..712 | 36..665 | 3150 | 100 | Plus |
| GstD1-RB | 843 | CG10045-RB | 211..714 | 158..661 | 655 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12364916..12365545 | 665..36 | 3150 | 100 | Minus |
| 3R | 32079331 | 3R | 12367946..12368449 | 661..158 | 645 | 75.2 | Minus |
| 3R | 32079331 | 3R | 12373217..12373674 | 174..631 | 400 | 73.5 | Plus |
| 3R | 32079331 | 3R | 12375900..12376354 | 175..629 | 385 | 72.3 | Plus |
| 3R | 32079331 | 3R | 12374268..12374743 | 154..629 | 355 | 71.6 | Plus |
| 3R | 32079331 | 3R | 12372134..12372338 | 175..379 | 320 | 77.1 | Plus |
| 3R | 32079331 | 3R | 12380504..12380627 | 507..630 | 245 | 79.8 | Plus |
| 3R | 32079331 | 3R | 12366573..12366775 | 360..158 | 220 | 73.9 | Minus |
| 3R | 32079331 | 3R | 12377316..12377485 | 183..352 | 205 | 74.7 | Plus |
| 3R | 32079331 | 3R | 12378699..12378871 | 183..352 | 200 | 75.7 | Plus |
| 3R | 32079331 | 3R | 12380142..12380359 | 145..362 | 190 | 72.5 | Plus |
| 3R | 32079331 | 3R | 12372458..12372589 | 499..630 | 180 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:42 has no hits.
FMO05231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:31 Download gff for
FMO05231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD10-RA | 61..699 | 30..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:58 Download gff for
FMO05231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD10-RA | 61..699 | 30..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:26 Download gff for
FMO05231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD10-RA | 78..716 | 30..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:26 Download gff for
FMO05231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12364912..12365550 | 30..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:31 Download gff for
FMO05231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8190634..8191272 | 30..669 | 99 | | Minus |
