FMO05233.5prime Sequence
677 bp (677 high quality bases) assembled on 2008-08-22
> FMO05233.5prime
CCTATACGAAGTTATCAGTCGACATGGACTTTTACTACCATCCTTGCTCG
GCTCCTTGCCGCTCCGTTATAATGACAGCCAAGGCCCTTGGAGTTGACCT
GAATATGAAGCTATTGAAGGTCATGGACGGGGAGCAACTGAAGCCGGAGT
TTGTGAAGCTCAATCCACAGCACTGCATTCCCACCCTGGTGGACGATGGC
TTCTCCATCTGGGAATCCCGTGCCATTTTGATTTACTTGGTGGAGAAGTA
CGGCGCTGATGACTCGCTGTATCCCAGCGATCCCCAGAAGAAGGCTGTGG
TCAATCAGAGGCTCTACTTCGACATGGGCACCCTGTTTCAGAGTTTCGTC
GAGGCCATCTATCCACAGATAAGGAATAATCATCCCGCCGATCCAGAGGC
CATGCAGAAAGTGGACAGCGCCTTTGGCCACCTGGACACCTTCCTGGAGG
ACCAGGAGTATGTGGCTGGCGACTGCCTCACCATTGCCGACATTGCCCTG
TTGGCCTCCGTTTCCACCTTTGAGGTGGTGGACTTCGATATAGCCCAGTA
TCCAAATGTGGCCAGGTGGTACGAGAATGCCAAGGAAGTGACTCCCGGTT
GGGAAGAGAACTGGGACGGTGTACAGCTAATCAAGAAACTTGTCCAGGAG
AGGAATGAAGCAAGCTTTCTAGACCAT
FMO05233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD8-RA | 808 | CG4421-RA | 28..664 | 23..659 | 3185 | 100 | Plus |
| GstD1-RB | 843 | CG10045-RB | 95..687 | 27..619 | 670 | 75 | Plus |
| GstD1-RA | 825 | CG10045-RA | 77..669 | 27..619 | 670 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12380035..12380671 | 23..659 | 3185 | 100 | Plus |
| 3R | 32079331 | 3R | 12367973..12368565 | 619..27 | 670 | 74.2 | Minus |
| 3R | 32079331 | 3R | 12372052..12372590 | 78..616 | 595 | 74 | Plus |
| 3R | 32079331 | 3R | 12375818..12376361 | 78..621 | 455 | 72.2 | Plus |
| 3R | 32079331 | 3R | 12378654..12378870 | 123..336 | 375 | 79.3 | Plus |
| 3R | 32079331 | 3R | 12373113..12373385 | 55..327 | 360 | 75.5 | Plus |
| 3R | 32079331 | 3R | 12374188..12374464 | 59..335 | 320 | 74.4 | Plus |
| 3R | 32079331 | 3R | 12377277..12377484 | 129..336 | 260 | 75 | Plus |
| 3R | 32079331 | 3R | 12364951..12365074 | 615..492 | 245 | 79.8 | Minus |
| 3R | 32079331 | 3R | 12365219..12365436 | 347..130 | 190 | 72.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:58 has no hits.
FMO05233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:23 Download gff for
FMO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD8-RA | 9..649 | 15..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:01 Download gff for
FMO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD8-RA | 9..649 | 15..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:41 Download gff for
FMO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD8-RA | 24..664 | 15..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:41 Download gff for
FMO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12380031..12380671 | 15..659 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:23 Download gff for
FMO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8205753..8206393 | 15..659 | 99 | | Plus |
