FMO05234.5prime Sequence
1058 bp (948 high quality bases) assembled on 2008-08-22
> FMO05234.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGGGAACTCTGTACGACAGC
TTCGCCAAATACTACTATCCCCTTTTCCACACTGGAAAGCCCGGATCTGA
TGAGGACTTTAAGAAGATCGAGAGCTCCTTCGAGTATCTGAATATCTTCC
TGGAGGGCCAGAACTACGTGGCCGGTGACCACCTCACAGTGGCTGATATT
GCCATCCTCTCCACCGTTTCCACTTTCGAAATCTTTGATTTCGACCTCAA
CAAGTACCCGAATGTGGCCAGGTGGTATGCCAACGCCAAGAAGGTGACTC
CCGGATGGGAAGAGAACTGGAAAGGTGCCGTGGAACTGAAGTGCACTAGA
CGGATTCCCCCAGCCCTTCTGACGATGGATCTCTATAACATGTCTGGTTC
CCCGAGCACCCGGGCCGTTATGATGACCGCCAAAGCTGTGGGAGTCGAGT
TCAACTCGATACAAGTTAATACCTTTGTGGGGGAACAACTGGAGCCATGG
TTTGTAAAGATAAACCCTCAGCACACGATTCCAACCCTGGTGGACAATTT
ATTCGTTATTTGGGAAACTCGGGCCATTGTTGTCTACCTAGTGGAGCAGT
ACGGTAAGGATGATTCTCTGTACCCGAAGGATCCCCAGAAGCAAGCGCTG
ATCAACCAGCGTCTGTACTTCGATATGGGCACCCTGTACGATGGCATTGC
CAAGTACTTTTTCCCACTGCTTCGGACGGGCAAACCCGGAACTCATAGAA
TCTTGAGAAACTGAACGCTGCCTTCGATCTTCTCAACAACTTCCTGGATG
GCCAGGATTACGTGGCCGGCAATCAGCTTTCAGTGGCAGATATCGTTATA
TTGGCCACGTTTCCACAACGAAATGGTTGATTTCGATTTAAAGAAGTTCC
CAACGTGGACAGATGGTAATAAGAACCGCCCAAAAGTTACGCCGTGTTGG
TACGAGAACTTGGCCAAGAATTCAAAGCCGCCAAAATTTCTAGCCGAAAC
TTATAGAAAAGTTAGCAAGCTTTCTAGAACATCGGTTTGGCGGCGGGGCC
CAGTAATT
FMO05234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD6-RA | 780 | CG4423-RA | 10..689 | 340..1014 | 3045 | 97.5 | Plus |
| GstD5-RA | 840 | CG12242-RA | 327..643 | 25..341 | 1585 | 100 | Plus |
| GstD2-RA | 734 | CG4181-RA | 323..618 | 25..320 | 760 | 83.8 | Plus |
| GstD5-RA | 840 | CG12242-RA | 177..579 | 520..918 | 355 | 73.8 | Plus |
| GstD6-RA | 780 | CG4423-RA | 442..633 | 127..318 | 210 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12377137..12377799 | 340..999 | 2825 | 97.4 | Plus |
| 3R | 32079331 | 3R | 12376059..12376375 | 25..341 | 1585 | 100 | Plus |
| 3R | 32079331 | 3R | 12372293..12372588 | 25..320 | 760 | 83.8 | Plus |
| 3R | 32079331 | 3R | 12372102..12372331 | 479..708 | 415 | 78.7 | Plus |
| 3R | 32079331 | 3R | 12374570..12374749 | 147..326 | 405 | 81.7 | Plus |
| 3R | 32079331 | 3R | 12367978..12368196 | 320..102 | 390 | 78.5 | Minus |
| 3R | 32079331 | 3R | 12378659..12379042 | 479..858 | 365 | 74.2 | Plus |
| 3R | 32079331 | 3R | 12374297..12374464 | 519..686 | 300 | 78.6 | Plus |
| 3R | 32079331 | 3R | 12375909..12376097 | 520..708 | 300 | 77.2 | Plus |
| 3R | 32079331 | 3R | 12380141..12380348 | 480..687 | 260 | 75 | Plus |
| 3R | 32079331 | 3R | 12380452..12380633 | 146..327 | 250 | 75.8 | Plus |
| 3R | 32079331 | 3R | 12373499..12373672 | 147..320 | 240 | 75.9 | Plus |
| 3R | 32079331 | 3R | 12368235..12368436 | 708..507 | 230 | 74.3 | Minus |
| 3R | 32079331 | 3R | 12377569..12377760 | 127..318 | 210 | 74 | Plus |
| 3R | 32079331 | 3R | 12365229..12365398 | 688..519 | 205 | 74.7 | Minus |
| 3R | 32079331 | 3R | 12378974..12379103 | 146..275 | 200 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:59:46 has no hits.
FMO05234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:43 Download gff for
FMO05234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD6-RA | 1..648 | 375..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:30 Download gff for
FMO05234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD6-RA | 1..648 | 375..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:09 Download gff for
FMO05234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD6-RA | 10..692 | 340..1018 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:09 Download gff for
FMO05234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12376055..12376378 | 19..341 | 98 | -> | Plus |
| 3R | 12377139..12377824 | 342..1022 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:43 Download gff for
FMO05234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8201777..8202100 | 19..341 | 98 | -> | Plus |
| arm_3R | 8202861..8203546 | 342..1022 | 96 | | Plus |
