FMO05235.5prime Sequence
519 bp (519 high quality bases) assembled on 2008-08-22
> FMO05235.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGAACGTCCAT
GAGGATTTCCCTGAGGCTGCTTGCACTCCTGGCTTGTGCCATTTGCTCTC
AGGCTTCGCTGGAAAGGGAGAACAACGAGGGCACCAATATGGCAAATCAC
AAGCTAAGTGGCGTTATACAATGGAAGTACGAGAAGCGACCGTTTTGCAA
TGCATTTACAGGCTGTGGACGAAAGCGTACGTATCCCTCGTATCCGCCAT
TCTCGCTATTCAAACGCAACGAAGTCGAAGAGAAACCCTATAACAATGAG
TATTTATCCGAAGGTCTAAGTGATTTGATCGATATCAATGCCGAGCCAGC
TGTGGAAAATGTTCAAAAGCAAATCATGTCGCAGGCCAAAATCTTCGAGG
CCATCAAAGAAGCCAGCAAGGAAATCTTTCGGCAAAAGAACAAACAGAAA
ATGTTGCAAAATGAAAAGGAGATGCAGCAATTGGAGGAGCGCGAAAGCAA
AGCAAGCTTTCTAGACCAT
FMO05235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCAP-RB | 714 | CG4910-RB | 71..535 | 37..501 | 2325 | 100 | Plus |
| CCAP-RA | 1249 | CG4910-RA | 606..1070 | 37..501 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22700761..22701058 | 501..204 | 1490 | 100 | Minus |
| 3R | 32079331 | 3R | 22701369..22701479 | 147..37 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 22701103..22701167 | 212..148 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:52 has no hits.
FMO05235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:06 Download gff for
FMO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccap-RA | 606..1073 | 37..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:32 Download gff for
FMO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccap-RA | 606..1073 | 37..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:33 Download gff for
FMO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCAP-RA | 606..1073 | 37..505 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:33 Download gff for
FMO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22701369..22701486 | 32..147 | 96 | <- | Minus |
| 3R | 22700757..22701050 | 212..505 | 99 | <- | Minus |
| 3R | 22701104..22701167 | 148..211 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:06 Download gff for
FMO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18526479..18526772 | 212..505 | 99 | <- | Minus |
| arm_3R | 18526826..18526889 | 148..211 | 100 | <- | Minus |
| arm_3R | 18527091..18527208 | 32..147 | 96 | <- | Minus |
