FMO05238.5prime Sequence
505 bp (505 high quality bases) assembled on 2008-08-22
> FMO05238.5prime
CATACATTATACGAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCT
CTTCCGCTGTTTTCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCC
GATCCTGCAGTTGCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACAT
GATCCGCAGTGGCTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCG
ATCGGCTTCGCGTGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATG
TGCTACACAAAGTGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGG
GGAGTTCAACGCTCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCC
CGGAAATGATGGAGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACG
CATAAACAATTTAAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTG
CTTCTCTGAAAACGCCGATGGGCAGTTCATGTGGCCTGCAAGCTTTCTAG
ACCAT
FMO05238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lush-RB | 940 | CG8807-RB | 211..670 | 28..487 | 2285 | 99.8 | Plus |
| lush-RA | 963 | CG8807-RA | 224..683 | 28..487 | 2285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19605030..19605252 | 250..28 | 1115 | 100 | Minus |
| 3L | 28110227 | 3L | 19604820..19604975 | 405..250 | 750 | 98.7 | Minus |
| 3L | 28110227 | 3L | 19604678..19604763 | 487..402 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:26 has no hits.
FMO05238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:24 Download gff for
FMO05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lush-RA | 216..686 | 20..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:08 Download gff for
FMO05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lush-RA | 216..686 | 20..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:35 Download gff for
FMO05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lush-RA | 216..686 | 20..491 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:35 Download gff for
FMO05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19605030..19605260 | 20..250 | 98 | | Minus |
| 3L | 19604674..19604763 | 402..491 | 97 | <- | Minus |
| 3L | 19604824..19604974 | 251..401 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:24 Download gff for
FMO05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19597924..19598074 | 251..401 | 99 | <- | Minus |
| arm_3L | 19598130..19598360 | 20..250 | 98 | | Minus |
| arm_3L | 19597774..19597863 | 402..491 | 97 | <- | Minus |
