FMO05240.5prime Sequence
477 bp (477 high quality bases) assembled on 2008-08-22
> FMO05240.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCCACATGAAATCCTTCGT
GTGCATCGCTCTGGTCGCCTTCGCCGCCGCCGCTCTGGCTTCGCCCACCA
ACGTGGCTTCGGCCACCGGCTCCACTGGCTCCTCGGTGACCACCCAGGAC
GGAGAGCTGGAGGGAGTGACCGGACAGGGATTCGGTGACCTGACCCGTCT
CCGTAAGTCTGCCTACGGCGGCAGCTCCGGCGGCTATGGCGGCTCCAGCA
TCCCAGCTCCTCCCTGCCCCAAGAACTACCTGTTCAGCTGCCAGCCCAAC
CTTGCCCCCGTGCCATGCAGCGCTCCAGCTCCCAGCTACGGATCCGCCGG
CGCCTACTCCTCCCCGGTGGCCACCTACGTCGCCCCCAACTACGGCGTGC
CCCAGCACCAGCAGCAGCTGTACAGCGCCTACGTGCCCCAGACCTATGGC
TACCAGTACGCAAGCTTTCTAGACCAT
FMO05240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm26Aa-RB | 745 | CG9048-RB | 82..504 | 37..459 | 2115 | 100 | Plus |
| Vm26Aa-RA | 641 | CG9048-RA | 82..504 | 37..459 | 2115 | 100 | Plus |
| Vm34Ca-RA | 491 | CG9271-RA | 254..363 | 250..359 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5959837..5960259 | 459..37 | 2115 | 100 | Minus |
| 2L | 23513712 | 2L | 13411269..13411378 | 359..250 | 445 | 93.6 | Minus |
| 2L | 23513712 | 2L | 5957432..5957527 | 265..360 | 255 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:37 has no hits.
FMO05240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:05 Download gff for
FMO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Aa-RA | 74..513 | 29..470 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:10 Download gff for
FMO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Aa-RA | 74..513 | 29..470 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:43 Download gff for
FMO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Aa-RA | 74..513 | 29..470 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:43 Download gff for
FMO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5959828..5960263 | 33..470 | 98 | -- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:05 Download gff for
FMO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5959828..5960263 | 33..470 | 98 | -- | Minus |
