FMO05242.5prime Sequence
1199 bp (997 high quality bases) assembled on 2008-08-22
> FMO05242.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATAATACTTTGG
TCTCTAATCGTGCATCTTCAATTGACATGCTTGCATTTAATCCTGCAGAC
TCCAAATCTTGAGGCTCTCGATGCCCTTGAAATAATCAACTACCAGACCA
CCAAGTACACAATCCCCGAAGTTTGGAAAGAGCAGCCAGTGGCGACCATT
GGCGAGGACGTGGATGATCAGGACACCGAAGATGAGGAAAGCTATCTGAA
GTTCGGCGACGATGCGGAGGTTAGGACTTCGGTTTCGGAAGGACTTCACG
AAGGTGCCTTCTGCCGGCGGAGCTTCGATGGCCGGAGTGGATACTGCATC
CTGGCCTATCAGTGCCTCCACGTCATTCGAGAGTATCGGGTGCATGGCAC
CCGCATCGACATCTGCACCCATCGCAACAATGTCCCTGTCATCTGTTGTC
CATTGGCGGACAAGCATGTGCTGGCTCAGCGCATAAGTGCCACCAAATGT
CAGGAGTACAATGCTGCCGCCAGAAGGCTTCACTTGACGGACACCGGACG
CACATTCTCCGGGAAGCAGTGTGTGCCCAGTGTTCCCCTGATAGTCGGTG
GAACCCCCACTCGACACGGACTCTTCCCTCACATGGCTGCCTTAGGATGG
ACGCAGGGTAGTGGCTCCAAGGATCAAGATATAAAATGGGGCTGTGGAGG
CGCCCTGGTTAGCGAACTGTATGTCCTGACCGCTGCCCACTGTGCCACCT
CTGGTAGCAAACCACCGGACATGGTTCGCTTGGCGCCCGCCAGTTGAACG
AGACCAGCGCGACCCAGCAGACATCAAGATCCTCATCATCGTGCTGCATC
CGAAGTACAGATCCTCGGCATATTACCACGATATTGCCCTGCTCAAGCTG
ACCAGAAGGTCAGTTCTCGGAGCAGGTGCGTCCTGCTTGCCTGTGCACTG
CGGAGCTCAGATACCCACTGTGTGCCGCCGTGGGACGCACCGAGTCTGGC
GCAATCGATGCCTGCCCAGTGACTGACGTATCCCAAATGACTGCAGCAAA
TCTATCGCAAGACGACGTCTGCCAGGGATCTCAGGGCAGTCTGTGCGAAT
TGGCAGGAAGACCTGCAGGGACTCGGTCATTCGGCTGTGCGAAACTGCTG
CCTGTGCATACCGTGAATCTGCGCCCATTCCGAATATACACAGCTATAG
FMO05242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snk-RB | 1434 | CG7996-RB | 93..1162 | 36..1073 | 4575 | 96.9 | Plus |
| snk-RA | 1403 | CG7996-RA | 62..1131 | 36..1073 | 4575 | 96.9 | Plus |
| snk-RC | 1399 | CG7996-RC | 62..1127 | 36..1073 | 4505 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13041158..13041539 | 495..114 | 1910 | 100 | Minus |
| 3R | 32079331 | 3R | 13040840..13041101 | 757..496 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 13040593..13040786 | 945..756 | 775 | 96.9 | Minus |
| 3R | 32079331 | 3R | 13041603..13041681 | 114..36 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:39 has no hits.
FMO05242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:42 Download gff for
FMO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snk-RA | 60..1052 | 33..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:13 Download gff for
FMO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snk-RB | 91..1083 | 33..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:37 Download gff for
FMO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snk-RA | 60..1052 | 33..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:37 Download gff for
FMO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13040516..13040784 | 758..1008 | 93 | <- | Minus |
| 3R | 13040840..13041101 | 496..757 | 100 | <- | Minus |
| 3R | 13041158..13041538 | 115..495 | 100 | <- | Minus |
| 3R | 13041603..13041683 | 33..114 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:42 Download gff for
FMO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8866880..8867260 | 115..495 | 100 | <- | Minus |
| arm_3R | 8867325..8867405 | 33..114 | 98 | | Minus |
| arm_3R | 8866238..8866506 | 758..1008 | 93 | <- | Minus |
| arm_3R | 8866562..8866823 | 496..757 | 100 | <- | Minus |
