FMO05248.5prime Sequence
539 bp (539 high quality bases) assembled on 2008-08-22
> FMO05248.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCATTCAAGTAT
CTGATCTTCGCCTCGGCTCTGTGCCTGAGCCTCGCCTATCCGTTGGAGCA
CCAGTACTACGAGGAGAGCCATGGATATGAGCACCTGGCCCATCACGAAC
CGGAGCCCATCCATGAGTATGGCCACCATCAAATCGAACGCATCTCACTG
GGCGAGGAGCACGGTCACCTCGAACACGCTGAGCCCCACTACGAGACCCA
CGAGTCTCACGGACATGATGAACATGTGGATTACTATGCTCCTCCCAAAT
ATGCTTTCAAGTACGGCGTGAATGACTTCCACACCGGAGATGTGAAGTCG
CAGCACGAGACCCGCGATGGTGACACCGTCAAGGGACAGTACTCCCTGGT
GGAGCCCGATGGTTCCATCCGCACCGTGGACTACACCGCCGACAAGCACA
ATGGATTCAACGCCGTGGTCCACAAGACCGCTCCAGTGCATCATCATGAG
GAGCTGCACGAACACCACTACGCAAGCTTTCTAGACCAT
FMO05248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr66Cb-RA | 1001 | CG7076-RA | 66..551 | 36..521 | 2430 | 100 | Plus |
| Cpr62Bc-RB | 1017 | CG1919-RB | 248..420 | 308..480 | 445 | 83.8 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 248..420 | 308..480 | 445 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8337587..8337829 | 46..288 | 1215 | 100 | Plus |
| 3L | 28110227 | 3L | 8337912..8338145 | 288..521 | 1170 | 100 | Plus |
| 3L | 28110227 | 3L | 1840995..1841167 | 480..308 | 445 | 83.8 | Minus |
| 3L | 28110227 | 3L | 8326839..8326933 | 387..481 | 325 | 89.5 | Plus |
| 3L | 28110227 | 3L | 1834470..1834526 | 443..387 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:44 has no hits.
FMO05248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:03 Download gff for
FMO05248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr66Cb-RA | 66..561 | 36..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:06 Download gff for
FMO05248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr66Cb-RA | 66..561 | 36..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:03 Download gff for
FMO05248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr66Cb-RA | 66..561 | 36..533 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:03 Download gff for
FMO05248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8337587..8337828 | 46..287 | 100 | -> | Plus |
| 3L | 8337912..8338155 | 288..533 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:03 Download gff for
FMO05248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8330687..8330928 | 46..287 | 100 | -> | Plus |
| arm_3L | 8331012..8331255 | 288..533 | 97 | | Plus |
