FMO05250.5prime Sequence
447 bp (447 high quality bases) assembled on 2008-08-22
> FMO05250.5prime
CATTATACGAAGTTATCAGTCGACATGTCGCTCACCCACGCCTCCGCCGC
AGCCCTCGTCTTGGCCCTCTGCTGCCTCAGTTTCATTCAGGCGCAGCCAC
AACGCGGACTTCCCCCACCACGCGGCAACTCCTTCGACGCGAACGCGGTG
ATTCTCAAGCAGAACTTCGACCTGAATCCCGATGGCTCCTATCAGTACAA
CTACGAGACAAGCAACGGAATCCGAGCGGATGAGGCTGGCTATTTGAAGA
ACCCGGGCAGTCAGATCGAGGCTCAGGTGATGCAGGGCTCCTACTCGTAC
ACCGGACCCGATGGCGTGGTCTACACCATCACCTACATTGCTGATGAGAA
CGGATACCGCGCCGAAGGAGCCCACATACCCACACCGCCACCAGTTCGCG
CCGCCGCCGCTCCCGGAAGATTCTTCAAGGCAAGCTTTCTAGACCAT
FMO05250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ea-RA | 829 | CG9079-RA | 45..450 | 24..429 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11252716..11252892 | 200..24 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 11252130..11252285 | 429..274 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 11252367..11252444 | 278..201 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:01 has no hits.
FMO05250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:14 Download gff for
FMO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 36..453 | 15..433 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:24 Download gff for
FMO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 1..408 | 25..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:47 Download gff for
FMO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 36..453 | 15..433 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:47 Download gff for
FMO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11252716..11252896 | 18..200 | 98 | | Minus |
| 2R | 11252127..11252282 | 277..433 | 98 | <- | Minus |
| 2R | 11252369..11252444 | 201..276 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:14 Download gff for
FMO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7139632..7139787 | 277..433 | 98 | <- | Minus |
| arm_2R | 7139874..7139949 | 201..276 | 100 | <- | Minus |
| arm_2R | 7140221..7140401 | 18..200 | 98 | | Minus |
