FMO05253.5prime Sequence
440 bp (440 high quality bases) assembled on 2008-08-22
> FMO05253.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAAATTGGTG
GTGTTGTCTGCTCTCCTCGCCGTAGCTGTCGCTCGTCCCGGTCATCTTTA
TGAGTCTCCTCTGGTTTATGCCGCTCCAGCTGCCACAACCGTTGTCCAGG
AGCGCTCTCTGGCCAAGGTGGGTTCTGTGGTCAGCAGCATTCCCACATCG
GTCTCCCACCAGAGCCAGTCGGTGGTGCACAGCCACTCGCATGTAGTGGA
GGACATCGTGGCCCCGGTGGTGAAGTCCACTCCGGTGGTCAGCTATGCTG
CAGCTGCCCCAGTGGTGCATACCGCCTATGCTGCCGCTCCCGTTGTCCAC
ACCAGCTATGCCGCCCCGGTGGTGCACACCTCCTATGCCGCCGCTTCTCC
GGTTGTCTACAACTCCAGCTGGGCAAGCTTTCTAGACCAT
FMO05253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13063-RA | 544 | CG13063-RA | 46..434 | 34..422 | 1945 | 100 | Plus |
| CG13043-RA | 646 | CG13043-RA | 80..457 | 36..404 | 730 | 80.4 | Plus |
| CG13044-RA | 624 | CG13044-RA | 66..307 | 36..280 | 230 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16306720..16307095 | 47..422 | 1880 | 100 | Plus |
| 3L | 28110227 | 3L | 16305469..16305791 | 355..36 | 695 | 81.7 | Minus |
| 3L | 28110227 | 3L | 16302851..16302978 | 233..106 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:11 has no hits.
FMO05253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:21 Download gff for
FMO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13063-RA | 38..437 | 26..426 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:27 Download gff for
FMO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13063-RA | 1..390 | 36..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:52 Download gff for
FMO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13063-RA | 38..437 | 26..426 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:52 Download gff for
FMO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16306721..16307098 | 48..426 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:21 Download gff for
FMO05253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16299821..16300198 | 48..426 | 99 | | Plus |
