Clone FMO05254 Report

Search the DGRC for FMO05254

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:52
Well:54
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13215-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05254.5prime Sequence

403 bp (403 high quality bases) assembled on 2008-08-22

> FMO05254.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTGCATCA
TATCCATCGTTGTGATCTCCATGATCTTCGGTTTAAGCCTGATCCAAGCA
GCACCCATCGCTAAGGATGCCCAGAATCCAGGATTCGTTTCGGCCACGGA
TATTACCGGAGAGCCAGTGCGCCAGAAGCGATCCAGTGCGGATTACTACC
AGGGCGACTATTTCATCTGCTATCCCAAGAGCGCAGTGTACGGCAAACAT
GGATACGGTGCAACCAATCGCAGATCCTACGACTCGGAAGACTATGCGCC
CCACTATTTGGCCGACGATCCATTGGTCGTTCGCCAGGCTCGTGCTGATG
CCAGACGCGCCGCCTACACCGACAGCTTTGGCAAAGCAAGCTTTCTAGAC
CAT

FMO05254.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13215-RA 621 CG13215-RA 95..444 36..385 1750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11239671..11240020 385..36 1750 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:59:21 has no hits.

FMO05254.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:27 Download gff for FMO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13215-RA 85..447 27..389 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:28 Download gff for FMO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13215-RA 1..351 38..389 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:57 Download gff for FMO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13215-RA 85..447 27..389 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:57 Download gff for FMO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11239667..11240030 27..389 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:27 Download gff for FMO05254.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7127172..7127535 27..389 98   Minus