Clone FMO05257 Report

Search the DGRC for FMO05257

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:52
Well:57
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11373-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05257.5prime Sequence

232 bp (232 high quality bases) assembled on 2008-08-22

> FMO05257.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCGAAAAAC
CATCAGCAAAGTCGGCTCCGAGGCCCCTGACCAGCATAAAGGGGACCAGG
CCCTCCACATCCTCATCCAATCCCACCACCAGCAGGAGCAAACCCACAGG
AACTGGAGTGGTTCGACCACCATTGCCAAATGCACACGATAGGATTTGGA
AGATTATGAAGATGGCAAGCTTTCTAGACCAT

FMO05257.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11373-RA 359 CG11373-RA 43..219 38..214 885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5960790..5960945 193..38 780 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:35:03 has no hits.

FMO05257.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:10 Download gff for FMO05257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11373-RA 43..222 38..218 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:34 Download gff for FMO05257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11373-RA 41..220 38..218 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:16 Download gff for FMO05257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11373-RA 43..222 38..218 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:16 Download gff for FMO05257.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5960482..5960505 194..218 92 <- Minus
3R 5960790..5960945 38..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:10 Download gff for FMO05257.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1786204..1786227 194..218 92 <- Minus
arm_3R 1786512..1786667 38..193 100   Minus