FMO05276.5prime Sequence
612 bp (612 high quality bases) assembled on 2008-08-22
> FMO05276.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGAAGTTGGTGT
TACCCTAAACAACGAACTCGAGGAAAAGATTTCGGAAGCATTTTGCATAT
TTGATACTCATGGCGATAAGTATATTGATTCCCGCAATGTCGGCAACGTG
CTCCGATTTTTAGGTTGCGCGCCCACCGAAAAAGAGGTCGAAGATGTCAT
TAAAGCCACCGATTCCGTCGACTATCCAGGCGAAGCCCATTTGGTGAAGT
TCATGGAACACGTTTCCAAACTGCTGATGGATCGACAAATGGAACCAGCC
TCGTCGGAAAAGCTTCTCGAGGCCTTTGAGACCCTGGATCCAGAAAATAA
AAAATATCTGACCAAGGAGTACTTCGGCAAATTAATGGCGGAGGAAGGAG
AACCTTTCTCCGCTGAAGAATTGGATGCTATGTGGCCTGTGGCAATTGAT
CCCATTACTGGACACATTCCCTACACCTTCTACATAAATCAACTCAGGCA
CAAGCCTGATATCTATGAAATTGCCGAGGTTATCAAGGAGGAACTAGCAC
AAGCCGAAAAAGAAAAGGGCAAGAAACCACAACAACCACTGTTTGCAAGC
TTTCTAGACCAT
FMO05276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9406-RA | 732 | CG9406-RA | 108..665 | 37..594 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21142545..21142783 | 49..287 | 1195 | 100 | Plus |
| 2R | 25286936 | 2R | 21142836..21143046 | 288..498 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 21143098..21143194 | 498..594 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:40 has no hits.
FMO05276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:15 Download gff for
FMO05276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9406-RA | 104..665 | 33..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:51 Download gff for
FMO05276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9406-RA | 29..593 | 33..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:05 Download gff for
FMO05276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9406-RA | 104..665 | 33..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:05 Download gff for
FMO05276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21142836..21143046 | 288..498 | 100 | -> | Plus |
| 2R | 21143099..21143194 | 499..594 | 100 | | Plus |
| 2R | 21142546..21142783 | 50..287 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:15 Download gff for
FMO05276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17030051..17030288 | 50..287 | 100 | -> | Plus |
| arm_2R | 17030341..17030551 | 288..498 | 100 | -> | Plus |
| arm_2R | 17030604..17030699 | 499..594 | 100 | | Plus |
