FMO05287.5prime Sequence
814 bp (630 high quality bases) assembled on 2008-08-22
> FMO05287.5prime
TGGGTTTTACCAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGT
AAATGTCGTTGAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTG
GAGCTGAATTGAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCT
AATAGCCAGCCATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTT
TGGAAGTTTTCAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGG
CCAAGATCGCCCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGA
ATCAGCGATGAGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTT
CAAGGGCACATCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCAT
TCAGATTCATGCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAG
GAGCTTATGACCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGC
AATGCGCGAACGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGA
ACCGGAGCCTGTACGACAAGATGCGATCGCAGATGGCATTGGATTGGATT
TGCCAGGGAACACGATAATCCAGGCGTTATTCGCAGGCAGTTGGGTGCTT
CGCCCAGAGGGAGCTGGAGACCTTTCGCATGGGCTGGGCGTGAATTGCGC
TTTTCCAAAGGAAAGAAGGATATCCTTATGATAGCACATAATCAGCTGGG
CGGCAGTGCCCTTAACTCGGCTACCATTGATGATGCAAGCCTTTCTAGAA
CATTCGTTGGGGCG
FMO05287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lft-RB | 1281 | CG13139-RB | 238..1017 | 1..784 | 3685 | 98.5 | Plus |
| lft-RA | 1266 | CG13139-RA | 223..1002 | 1..784 | 3685 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10365769..10366146 | 403..784 | 1560 | 96.3 | Plus |
| 2L | 23513712 | 2L | 10365490..10365680 | 214..404 | 955 | 100 | Plus |
| 2L | 23513712 | 2L | 10365263..10365428 | 48..213 | 830 | 100 | Plus |
| 2L | 23513712 | 2L | 10365142..10365190 | 1..49 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:25 has no hits.
FMO05287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:43 Download gff for
FMO05287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lft-RA | 223..1005 | 1..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:08 Download gff for
FMO05287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13139-RA | 25..807 | 1..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:57 Download gff for
FMO05287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lft-RA | 223..1005 | 1..788 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:57 Download gff for
FMO05287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10365142..10365190 | 1..49 | 100 | -> | Plus |
| 2L | 10365265..10365428 | 50..213 | 100 | -> | Plus |
| 2L | 10365490..10365680 | 214..404 | 100 | -> | Plus |
| 2L | 10365771..10366149 | 405..788 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:43 Download gff for
FMO05287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10365142..10365190 | 1..49 | 100 | -> | Plus |
| arm_2L | 10365265..10365428 | 50..213 | 100 | -> | Plus |
| arm_2L | 10365490..10365680 | 214..404 | 100 | -> | Plus |
| arm_2L | 10365771..10366149 | 405..788 | 96 | | Plus |
