FMO05288.5prime Sequence
916 bp (916 high quality bases) assembled on 2008-08-22
> FMO05288.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCAGCACGCGCT
ACGGCCGCACTTTGCTCGGCATTTGGAGTGGATTATTGGCCATTTTGTGC
CTGAATGAAATCGCCATGGATAGGTCGTTGGTTTCAGCCGTTGCCTACTA
CTCCGAAAAACCTGCCTTTCTGCCATCTTGTCGGATCTACGAACCGGGCT
TCACCAAGTGCTCTACGAATAGCATTCAGAAGCTTCTTGATCAGTTGAAC
ATTGGAATACCAGAGGTGCTCGAGCGGTTCGGTCCCTTTGATCCCATGAG
AGTTAGGGATATAGTTTTCAAGCAGGATAACAACGAGGTGGCCACCATCA
GAGCCAATCTGACTGACCTGGTGGTCAAGGGTTTTGCCAACACAAAGGTC
AAGGAGAGTCGTGTGAGCAAGAAAGACTTTAGCTGGCAGACCAAAATATA
TCTTCCGAAAATGAGACTGGATGGAAGGTATGAAATGGCTGGACGAATAC
TCCTTATACCACTGAGTGGCTCTGGCAAAATATTTATTGAGATTGATGAT
CTTGACATTTTGCTACTAACAAAAATACGTCTGTATGAAAAGGGTGGCTT
CACCTTCGACAACGTGACCGCTGTGCAGGTTCAACTGAATCTGTCCAAAG
TGCGCACTTATCTGGACAATCTATTCAATGGACGTAGCAAGGAGGTGGAG
CGCAGTACGAATGAGTTTTTCAATGAAAACTGGCGGGATTTCTACGAGGC
CCTGAAACACTCATCGTTGAGACGGTGGAAAATATCCTTTATGATGTAAT
GTCTACGGTTTTTCATTTAATACCAGCCACTTTTTCGTTGAGGACATACC
AACGCCCCAGCAATTTTATGGTCCAAAGGAGATACTTGGCAAAAAGAAGC
AAGCTTTCTTGACCAT
FMO05288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14259-RA | 1072 | CG14259-RA | 120..983 | 34..895 | 4255 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27095415..27095767 | 545..895 | 1650 | 99.2 | Plus |
| 3R | 32079331 | 3R | 27094839..27095088 | 162..411 | 1250 | 100 | Plus |
| 3R | 32079331 | 3R | 27095212..27095346 | 411..545 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 27094652..27094779 | 34..161 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:15 has no hits.
FMO05288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:05 Download gff for
FMO05288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14259-RA | 156..1028 | 34..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:10 Download gff for
FMO05288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14259-RA | 1..870 | 35..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:42 Download gff for
FMO05288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14259-RA | 120..992 | 34..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:42 Download gff for
FMO05288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27094652..27094779 | 34..161 | 100 | -> | Plus |
| 3R | 27094839..27095088 | 162..411 | 100 | -> | Plus |
| 3R | 27095213..27095346 | 412..545 | 100 | -> | Plus |
| 3R | 27095416..27095776 | 546..906 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:05 Download gff for
FMO05288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22920374..22920501 | 34..161 | 100 | -> | Plus |
| arm_3R | 22920561..22920810 | 162..411 | 100 | -> | Plus |
| arm_3R | 22920935..22921068 | 412..545 | 100 | -> | Plus |
| arm_3R | 22921138..22921498 | 546..906 | 97 | | Plus |
