FMO05289.5prime Sequence
817 bp (817 high quality bases) assembled on 2008-08-22
> FMO05289.5prime
GCATACATTATACGAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCA
CCGCGCCAAAAGAGTTGGGTGGGACCCACGTACAGAGTAACCATAATTAT
GCTCGTCATCGGACAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCC
TGAAGGAATTTCTCGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTC
GTCAGCTTCCTATCCATCCAGCTCTACGGATTTTTCTACCACATAATCGT
TAAAAAGCCTATGTGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGG
TGAACACCATGTCGATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGC
CTCATCCTGTCAATCTTCCTAACATTCCTTATGATGATCATCAGTGTGAT
ATACGGAAATAGTGCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGC
ATAAGGTTATCCTGTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGC
ATCATCGTGTGTGCCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCT
GCTAGTATACACCATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTT
CCATGCGAAAGCCGAACTTCTACCGCCAGGAGTCGACCGGGGACTACATA
CTGATCGGCCAGCTGTACTACCTCAACTTTTTTGCCCTATATATGGGCTA
TGTGTGGACGACAGCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACA
TTCATGATATATTCGTGTACCTGTTCTATCGGAAGAACATCGAAGCAAGC
TTCTCTAGACCATTCGT
FMO05289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12914-RA | 1253 | CG12914-RA | 242..1006 | 30..794 | 3825 | 100 | Plus |
| CG12914-RB | 1238 | CG12914-RB | 242..991 | 30..794 | 3590 | 98 | Plus |
| CG12914-RC | 1251 | CG12914-RC | 217..1004 | 30..794 | 3585 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10248941..10249157 | 578..794 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 10248312..10248462 | 143..293 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 10248524..10248671 | 293..440 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 10248721..10248858 | 441..578 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 10248132..10248244 | 30..142 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:56 has no hits.
FMO05289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:27 Download gff for
FMO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12914-RA | 233..1006 | 21..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:11 Download gff for
FMO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12914-RA | 233..1006 | 21..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:30 Download gff for
FMO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12914-RA | 233..1006 | 21..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:30 Download gff for
FMO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10248123..10248244 | 21..142 | 96 | -> | Plus |
| 2R | 10248312..10248462 | 143..293 | 100 | -> | Plus |
| 2R | 10248525..10248671 | 294..440 | 100 | -> | Plus |
| 2R | 10248721..10248858 | 441..578 | 100 | -> | Plus |
| 2R | 10248942..10249157 | 579..794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:27 Download gff for
FMO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6136447..6136662 | 579..794 | 100 | | Plus |
| arm_2R | 6135628..6135749 | 21..142 | 96 | -> | Plus |
| arm_2R | 6135817..6135967 | 143..293 | 100 | -> | Plus |
| arm_2R | 6136030..6136176 | 294..440 | 100 | -> | Plus |
| arm_2R | 6136226..6136363 | 441..578 | 100 | -> | Plus |
