FMO05290.5prime Sequence
961 bp (961 high quality bases) assembled on 2008-08-22
> FMO05290.5prime
TTCGTATAGCATACATTATACAAAGTTATCAGTCGACATGCTCTACGTGA
TCGATCAGCGGCTGAAGGCGCAGCAGATTGCTCAGGACAAATCGGTCCAG
GTTATCCACGATGTGACTTCTGTGCTGCTCGAACCAAAGTTTATAGACTC
GCTCCTAAACGGATCGAAACACAATAGTGCGCAGCTTTTGACCGCCGAGC
ATTGCAAGTTTATGCTGAACGACATTGCCACCTGCTCCTTGATGCGACTC
GACGAGCAGTCGATGTCCAAGCTGTGGAATCTGATGACTATGGTCTACAA
GTGGCAGCTTTTCGTTTCCCGCCATCAGCACCATCTGCTGGAGATTACAT
TTCGGCACTTGGAGGCGATCAACAGGTTGTATCCGGATGCCAAACGGCAT
ATGCTGATTGACTTCACGAAAAACACGCTGCTGGACTTTTGGAATGCCAG
CGGTGAGGATGCGCAGCTGTCCATCTACCAGACGAATCGGGCCTGGCTGC
AGTGCTTTAACACAAAGATATCGCTTTTGATTCGCATGGGCTTTCAGGCC
ATGGACGGTAGTTTCATCAGGGACGTGGATCAAGATTACTACGCGGAATA
CGTTGAGTCAGCCGGCGATAATATCTATGCGAAGAGTGCCGACCAGCGGG
AGCGCCAACAACGGGAGCCCAACAGCATGGATCAGCTGGCCGCTCAGCTG
AACATAAATCCGGCGCAAAGTGAGGATCTGCAGCCCATCAACGCCCGCCA
GTTCCAGCAGCAGTTCGAGCAGGCCTTCGGCATGTGCTTTTCAATGACAC
AGCGGCCAGCTCCTCTGGCTGCGAGTTTGTACAGCTGCAGCCCACGACAT
CGGGCATCGTCCTCGGAAAAGGTGGCGACGTCCATGTCCCGGGGAGGATC
CTTGCTGAACCAAAACCTGCTGGACCTGTAACGCAAAATGCCTGCAAGCT
TTCTAGACCAT
FMO05290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 1186 | CG13178-RA | 115..1024 | 34..943 | 4445 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12143353..12144195 | 943..101 | 4075 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12144371..12144438 | 101..34 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:52 has no hits.
FMO05290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:38 Download gff for
FMO05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 96..1011 | 34..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:34 Download gff for
FMO05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 1..909 | 38..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:31 Download gff for
FMO05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OSCP1-RA | 115..1030 | 34..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:31 Download gff for
FMO05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12143347..12144194 | 102..949 | 99 | <- | Minus |
| 2R | 12144371..12144434 | 38..101 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:38 Download gff for
FMO05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8030852..8031699 | 102..949 | 99 | <- | Minus |
| arm_2R | 8031876..8031939 | 38..101 | 100 | <- | Minus |
