FMO05295.5prime Sequence
959 bp (959 high quality bases) assembled on 2008-08-22
> FMO05295.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGCCGGTTTTTGATG
ACCACTTCCTTGGCGACTGCCATGATGAGCCCGAAGGACTTTTGCCGCGT
TGGTGGTTCGGTGGCTTTGCCTCGATGTGCGTTGCCTTCGCAGTGGCGCC
CATTGATATCGTGAAAACTCACATGCAGATCCAAAGGCAAAAGCGTTCAA
TTTTAGGCACGGTCAAAAGAATACACTCTTTAAAAGGATACTTGGGCTTC
TACGATGGCTTCTCGGCTGCCATCCTGAGACAAATGACCAGCACCAATAT
CCATTTCATAGTGTATGATACTGGCAAGAAAATGGAGTACGTCGATAGGG
ATTCATATCTGGGAAAGATTATTTTGGGCTGCGTGGCTGGAGCTTGCGGT
TCTGCGTTTGGTATACCAACGGATCTGATTAACGTGCGGATGCAAACCGA
TATGAAGGAGCCGCCGTACAAGCGACGCAACTATAAGCATGTCTTCGATG
GACTCATTCGAATTCCCAAGGAGGAGGGCTGGAAGGCACTTTACAAAGGT
GGATCGGTAGCGGTCTTCAAATCATCGCTAAGCACTTGCAGCCAGATAGC
TTTCTACGATATTATTAAAACGGAAGTGAGGAAAAATATCTCTGTGAATG
ACGGATTGCCCTTGCACTTTCTCACTTCGCTGGGTACATCGATCATTTCG
TCTGCGATCACTCATCCCCTGGACGTGGTAAGGACCATTATGATGAACTC
CAGACCCGGCGAATTTCGCACAGTCTTCCAAGCGTCTGTTCACATGATGC
GCTTTGGCGTATGGGACCCTATCGAGGATTTGTGCCAACTATAGTGCGAA
AAGCACCGGCCACCACTTTGCTATTTTGTTTTGTACGAGCAACTGACGCT
CTAATTTCGGATTTTGCTCCCTGGGGAGGGGAGAAGTACAATGCAAGCTT
TCAGACCAT
FMO05295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic4-RC | 1811 | CG18363-RC | 142..1047 | 35..942 | 4400 | 99.2 | Plus |
| Dic4-RA | 1144 | CG18363-RA | 142..1047 | 35..942 | 4400 | 99.2 | Plus |
| Dic4-RB | 1140 | CG18363-RB | 142..1043 | 35..942 | 4330 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18697166..18697492 | 942..614 | 1405 | 97.9 | Minus |
| 3L | 28110227 | 3L | 18697760..18698009 | 484..235 | 1235 | 99.6 | Minus |
| 3L | 28110227 | 3L | 18698069..18698271 | 237..35 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 18697567..18697699 | 613..481 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:19 has no hits.
FMO05295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:40 Download gff for
FMO05295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic4-RA | 138..1051 | 28..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:02 Download gff for
FMO05295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18363-RA | 138..1051 | 28..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:00 Download gff for
FMO05295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic4-RA | 138..1051 | 28..947 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:00 Download gff for
FMO05295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18697764..18698007 | 237..480 | 100 | <- | Minus |
| 3L | 18698070..18698275 | 28..236 | 98 | | Minus |
| 3L | 18697162..18697492 | 614..947 | 97 | <- | Minus |
| 3L | 18697567..18697699 | 481..613 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:40 Download gff for
FMO05295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18690262..18690592 | 614..947 | 97 | <- | Minus |
| arm_3L | 18690667..18690799 | 481..613 | 100 | <- | Minus |
| arm_3L | 18690864..18691107 | 237..480 | 100 | <- | Minus |
| arm_3L | 18691170..18691375 | 28..236 | 98 | | Minus |
