Clone FMO05296 Report

Search the DGRC for FMO05296

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:52
Well:96
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15576-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05296.5prime Sequence

424 bp (424 high quality bases) assembled on 2008-08-22

> FMO05296.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATCCATTTA
GGCCAAATCCAGGTCAGAGTTTTCGCATTCGCTTGAATATGGATCGCGTG
CCGGGCGAAGAAGAGCGCAATATACAGCCATCGACTGATGAACGTCGAAT
CACCCAAATTCCACCGATTCAATTGCGCATCGATCATCAGCGGGATGTGA
ATCGTTTCATGATCAATATGCGTGTAATGCTACATCGACGGAGGACGGAA
TTAAATATGGGAGGCGGCGATAGTATCGGCGTGTGGAACTGGAGGGAGCC
TCCGATGCCAAGCGGTTTGATTGGCGAGGGCGATTGTGATGGCGGTGGCT
ATGGTAATTACGCTGGTGACTATCATCCACCATTGTGGGGACTGCCACCA
AACCCCGCAAGCTTTCTAGACCAT

FMO05296.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15576-RB 921 CG15576-RB 153..521 38..406 1830 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4252270..4252638 406..38 1830 99.7 Minus
Blast to na_te.dros performed on 2014-11-28 23:02:11 has no hits.

FMO05296.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:32 Download gff for FMO05296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15576-RB 144..521 28..406 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:03 Download gff for FMO05296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15576-RB 51..428 28..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:49 Download gff for FMO05296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15576-RB 144..521 28..406 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:49 Download gff for FMO05296.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4252270..4252653 26..406 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:32 Download gff for FMO05296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4146303..4146686 26..406 97 -> Minus