FMO05301.5prime Sequence
1246 bp (1063 high quality bases) assembled on 2008-08-22
> FMO05301.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAGAGAAT
CAGCTGTATCCCATGTCATCGGAGTTCTTTGACACCGGCTCGAACAGCAG
CAGCAACACACTTAAATACGATCTGTATTCCCTGGGCTCCACCGTTGTGG
GGGCGGCGCTGCCCACGTTGACGATCAACACGGGCTACGGCAGCAGCAGC
AGCAACAATAACAACACTAATAACAACAATAACAACAGCAGTAGTCACAG
CAGCAGCAGCAACTGCTCCACCAGCACCACAAATACCTGTAATGTAATGC
TAAGTACAACGGCCATAACAATACCACGCAGCAGCAACCACAACCAGATC
CATCATCATCCGTATCAGCAGTCCGATTTGCAGACACCGCGCCATCATCC
CAGTCCTCTACACACGTTGCCCAGCATGACCCATCAGCAAAATCAGCTTC
AGCAGCAGCAGCAGCAGCAACACCACAACCAACAGCAGCAGCTGCAGCAA
TCGCATTTGGCACTGGGAGAGCTTTCAGACTTTGGACTAGATGCACTGGA
TGCCGCTTCGCTATCGCCCACTCTGCTGCAGGATGTGAGCCTGAGTGCTG
TTTCTCCTCTAAGCACCACACTCTACAATGGCAACACCAGTGGAGCAGGC
AGCAGCAACGGAATAGGATCCGGCAGTGGTGGCTACTTCACGCCCGACAT
GTCGCACAGCCTCAGCCTGAATGTGGTCAGTGAGCAGGTTCTGCTGCAGG
AAGCCACAACCCCGAATGAGTTGCTCTACGAGATGACACCCAACTCGAAT
GCCATGTGGAGTGATATCAGCAGTGCCATTATCCATACCAAACACGAGCC
ATTCAGTCTGGACGATGACTATATCTTTCCCAACGATAAGGCCGAAATAC
AAGGCAGCCGATTTGTCTGACCTTAATGGCGGCGATTTTCTGGATGTTGA
TCGGAAAATATAGAGATTTTCTTGCCGCAGACCCGCAGTCACTCAAAGTT
GTCATTTCCTACTGTCGCGCAAGCTCAAGGACAGGATGCCCTGTGCACCG
CCCATGAACTTTTGCACAGCAACAACAGATCACAGCAGCTGCAGTCGCCA
GCCTGCCGCAGTGCAACGCCTGCCTACACCCTTCCAAACAGCAGCAGGTC
GAACGTCTCTCATAGTGTCTGATAATCCTCCGTTAGTCCAAGCCGACGAC
ACAGCTGTTCGCCGCGTTCTCTCGCCCGCGGGAATGAAGGATAATT
FMO05301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13624-RG | 3698 | CG13624-RG | 776..1894 | 39..1154 | 5025 | 97.6 | Plus |
| CG13624-RF | 3805 | CG13624-RF | 433..1551 | 39..1154 | 5025 | 97.6 | Plus |
| CG13624-RE | 3680 | CG13624-RE | 308..1426 | 39..1154 | 5025 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24561765..24562842 | 1112..39 | 4725 | 98.2 | Minus |
Blast to na_te.dros performed 2014-11-28 20:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2671 | 174..505 | 377 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7186 | 178..654 | 351 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..7086 | 191..499 | 334 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2641 | 191..499 | 330 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..7004 | 210..492 | 255 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2543 | 212..476 | 236 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6952 | 231..467 | 234 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1160 | 240..350 | 152 | 63.2 | Plus |
FMO05301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:40 Download gff for
FMO05301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13624-RC | 1306..2399 | 39..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:07 Download gff for
FMO05301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13624-RA | 429..1522 | 39..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:32 Download gff for
FMO05301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13624-RE | 308..1401 | 39..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:32 Download gff for
FMO05301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24561749..24562842 | 39..1129 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:40 Download gff for
FMO05301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20387471..20388564 | 39..1129 | 98 | | Minus |
