FMO05302.5prime Sequence
1216 bp (1031 high quality bases) assembled on 2008-08-22
> FMO05302.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGCTGC
AATTCCAAAACGACTGCGGGGACTCCGTTAAGCAAGCCATCATCGAGGAG
CTGCAGAACCTACTTAGCTCGGACACAGGAGTCCTGCAGCAGACAGAAAA
GAGGATCAAGCAGCTGGAGTACACGGAAGGCTATGGCGTCTACCTGTCCG
AGATCATTATGAACCAGGCGCACGAGCTGCCACTCCGTCAAATCGCGATC
GTGATGCTCACTCGTTACGTGGAGAACCACTGGACGGATGACGATGATGT
TAAAAGGAAAGCCAACGGTTGTATGGCCAGCGAGCAGGCCAAGCGAACCA
TACGAAACATTCTGCCAAACGGACTGTATGATCCCAATTCAAAGATACGC
TCCTCAGTCGCGCATACCATCTCCACCATAGCCGCCACGGATTACCCACA
TTGTTGGGCGGAGCTGTTCGACATCATTGTCAAATGCCTGGGCGGCAATG
AGGATTCCATACACGGTGCCATGCAGGTGCTGCAGGATTTCAGCTACGAC
GTGGAGCAAATCAAGGAACTGGGTCCAGTAGTCATACCCGAAGTCTATCG
CATCTTCGACTCCGAGCAAAATTACTCGATCAAAACAAGAGTTTCGGCCA
TTCGCATCTTGAAGCCACTTTTTGCATCCATTGCTGCACTGATCACCAAC
AAAGAAGAGCAGAGCACCATGATGAGCTCCATTTTGACAAACTTTATGGA
CAAGCTTATGCATTACCTGAGCATGAATAGCGGCGCCGTTTCCAGTTTCC
TGCTTCGCACGGAAATATCAAGGTGTTTACCCATTTGGTCAATGAGATGC
CAAAGTACATCAACCCCTTTATGGACCGTGTTCTGCCCATTGTCTGGCAG
CTACTCACACAAATAGCCGAGACTTACGTGAAGGTGTCGTGAATCAGACT
GAGACAAGTCGCTGGCAGCGCGACAGCGAGAGATGACGAGCAGACATTTC
ATCACTGATCATCAGATCTGAGTCATCAACTGCATACTGACATGCAACAA
CTACGTGCAGCATCAAATGTGCTGCGACTCAATACTAACATTGTTACTCA
CTGAACCAGAACATGAGACTGGCATGAGATCGAAGTTCGGATATAAGATA
TGGCTTGAGCAGGTCCATGCGCTGTAGTTCCTGCATAACGCATTCGGACC
CACAATTCGACATCGT
FMO05302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp9-RD | 3243 | CG5252-RD | 105..1157 | 41..1074 | 4830 | 98.2 | Plus |
| Ranbp9-RA | 3311 | CG5252-RA | 173..1225 | 41..1074 | 4830 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11412913..11413551 | 178..816 | 3195 | 100 | Plus |
| 3R | 32079331 | 3R | 11412694..11412833 | 41..180 | 700 | 100 | Plus |
| 3R | 32079331 | 3R | 11413613..11413751 | 823..960 | 645 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:34 has no hits.
FMO05302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:16 Download gff for
FMO05302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 171..1225 | 38..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:09 Download gff for
FMO05302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 171..1225 | 38..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:44 Download gff for
FMO05302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 171..1225 | 38..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:44 Download gff for
FMO05302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11412692..11412832 | 38..179 | 99 | -> | Plus |
| 3R | 11412915..11413559 | 180..823 | 99 | -> | Plus |
| 3R | 11413614..11413882 | 824..1074 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:16 Download gff for
FMO05302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7238414..7238554 | 38..179 | 99 | -> | Plus |
| arm_3R | 7238637..7239281 | 180..823 | 99 | -> | Plus |
| arm_3R | 7239336..7239604 | 824..1074 | 93 | | Plus |
