FMO05304.5prime Sequence
1265 bp (1082 high quality bases) assembled on 2008-08-22
> FMO05304.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGGAATTC
CGAACCAACACATCGCCAGCACCATCAGCACAATGGAAATTCTACCTCGG
GCGGACCGCCCGCCAAGCAATTGGGCATGACCTCGGCTATCAGTCTGGCC
GAGCCACGGCCTGAGGATCTCCAGCGCACTGATGAGCTCCGCGGCTCACT
GGAGCCGTACAACGTCTTTGAGAGCCAGGACGAGCTAAATCACCGTATGG
AGATCCTGGCCAAGCTCAACACACTGGTCAAGCAGTGGGTCAAGGAAATC
TCTGTCAGCAAGAACATGCCAGAGTCAGCCGCCGAGAAGCTTGGCGGCAA
GATCTACACATTCGGCTCGTATCGATTGGGTGTCCATCACAAGGGTGCCG
ATATAGATGCCTTATGTGTTGCTCCGCGAAATATTGAGCGCACCGACTAC
TTTCAGAGCTTCTTTGAGGTGCTCAAGAAGCAGCCAGAGGTAACCGAGTG
CCGCTCGGTGGAAGAGGCCTTTGTGCCCGTCATCAAAATGAACTTTGATG
GCATCGAAATTGATTTGCTGTTTGCCCGTCTGTCCCTAAAAGAAATTCCT
GATGACTTTGATCTACGGGATGATAACTTACTGCGGAATCTGGATCACCG
TTCGGTGCGCAGCCTCAACGGCTGTCGTGTGACGGACGAGATCCTGGCCC
TGGTGCCCAATATTGAAAATTTCCGCCTGGCACTGCGCACTATCAAATTG
TGGGCAAAGAAGCACGGAATCTACTCAAATTCATTGGGTTATTTCGGTGG
TGTGACCTGGGCCATGTTAGTGGCCAGAACCTGTCAGCTGTATCCCAACG
CTGCGGCTGCCACACTGGTGCACAAGTTTTTCTTGGTCTTTTCGCGCTGG
AAGTGGCCTAACCCAGTGCTACTCAAGCACCCGGACACGTTAATCTAAGA
TTTCAAGTCTGGGATCCGCGTGTCATGCCTCGGATCGGTATCATCTGATG
CCCATTATTACGCCCGCATACCCACAACAGAATTCCACATTTATGTGTCC
GATCCACAGAAGGTCATATTGACCGAGTTCATCGCGCATGAACATCACGA
TGAAATCATGCTCGTCGCATTCGGGGGACGTTGTTTGAGCCTATCTTTTT
TACGATACGCCACTATCTGTGTGTAATCCACCTCGCACGCTTGACATCAT
AATTGTCGGCTTGTTAGTCCAGTGCGCTCGTCTAATTGGAACTGAAGAGA
AATCCACATTGTGTC
FMO05304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 4043 | CG9854-RD | 877..2022 | 38..1164 | 5255 | 98.2 | Plus |
| hrg-RB | 3607 | CG9854-RB | 441..1586 | 38..1164 | 5255 | 98.2 | Plus |
| hrg-RA | 3914 | CG9854-RA | 748..1893 | 38..1164 | 5255 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19667528..19668250 | 760..38 | 3615 | 100 | Minus |
| 2R | 25286936 | 2R | 19667266..19667464 | 958..761 | 945 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19667044..19667209 | 1114..957 | 465 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:19 has no hits.
FMO05304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:34 Download gff for
FMO05304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 739..1862 | 26..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:14 Download gff for
FMO05304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RB | 424..1547 | 26..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:42 Download gff for
FMO05304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 739..1862 | 26..1139 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:42 Download gff for
FMO05304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19667015..19667209 | 957..1139 | 93 | <- | Minus |
| 2R | 19667268..19667464 | 761..956 | 99 | <- | Minus |
| 2R | 19667528..19668259 | 26..760 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:34 Download gff for
FMO05304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15554520..15554714 | 957..1139 | 93 | <- | Minus |
| arm_2R | 15554773..15554969 | 761..956 | 99 | <- | Minus |
| arm_2R | 15555033..15555764 | 26..760 | 99 | | Minus |
