FMO05306.5prime Sequence
1277 bp (1118 high quality bases) assembled on 2008-08-22
> FMO05306.5prime
CTAAAGGGGGGATCTCGAGGGATCCATAACTTCGTATAGCATACATTATA
CGAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGG
AACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAA
CGAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGG
CCCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTA
CAAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTA
CCAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATA
TCTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAG
ATCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCC
AGAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACAC
TGGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACG
TCTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCG
TCGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACT
CAAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAG
CAGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTC
CAGCGGACCGGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAAC
AGCAGCCATTGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAA
CTAACATCCTCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGC
TGTACAACAGGCCCATCTGCATCAGCAGCAGGCGCAGACCACAAGCGATG
CCATTAACACCGAGAATGTACAGCCCAGAGCCAAGTGCGCCCAAGCGTCC
AGCGATGACGAGGACATGATGAGGGTAGTGCGTTGGCGGACAACTCGGCC
ACCGGACCCAATCCCGCCTCGCTCTGCATCGCGTCCATGCGGAGTTGTGT
AAAGCAGCTGGCAGCGTTGTGACCAATCGTCGTCGATCATACCTAAGATC
AAAGAACACAGCGTTTCAACAGTGGTCCGAAATTGTTATGACCAGCCGAA
TCCATAGACATGCCCCAATGAAATGTAAGATGACCTGGACAGAGAGAACA
TGACAATTGAGGAGCTTACCACAACGT
FMO05306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RAA | 4623 | CG12052-RA | 607..1751 | 68..1189 | 5070 | 97.3 | Plus |
| lola-RZ | 2707 | CG12052-RZ | 403..1547 | 68..1189 | 5070 | 97.3 | Plus |
| lola-RB | 2974 | CG12052-RB | 397..1541 | 68..1189 | 5070 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10533118..10533511 | 635..242 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 10532334..10532895 | 1175..635 | 1840 | 94.3 | Minus |
| 2R | 25286936 | 2R | 10533576..10533749 | 241..68 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:42 has no hits.
FMO05306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:31 Download gff for
FMO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1487 | 60..1139 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:18 Download gff for
FMO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RI | 396..1490 | 60..1139 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:55 Download gff for
FMO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1487 | 60..1139 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:55 Download gff for
FMO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10532372..10532894 | 636..1139 | 96 | <- | Minus |
| 2R | 10533118..10533511 | 242..635 | 100 | <- | Minus |
| 2R | 10533576..10533765 | 48..241 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:31 Download gff for
FMO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6419877..6420399 | 636..1139 | 96 | <- | Minus |
| arm_2R | 6420623..6421016 | 242..635 | 100 | <- | Minus |
| arm_2R | 6421081..6421270 | 48..241 | 94 | -> | Minus |
