FMO05307.5prime Sequence
1235 bp (1086 high quality bases) assembled on 2008-08-22
> FMO05307.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGCGGCC
GCTTGCCTACTGTCTTCTTCTACTTCTTCGTTCGAGAAGACCTGCCGCAT
CTGCCACAAGGCCTTCGCGAACGTCTACCGCCTGCAGAGGCACATGATCA
GCCACGACGAGAGTGCGCTGCTGCGGAAGTTTAAGTGCAAGGAGTGCGAC
AAGGCCTTCAAGTTCAAGCACCACCTCAAGGAGCACGTGAGGATCCATTC
CGGCGAGAAGCCCTTCGGATGCGACAACTGCGGCAAGCGATTCTCGCACT
CGGGCAGCTTCTCCTCCCACATGACCTCCAAGAAGTGCATCAGCATGGGC
CTCAAGCTGAACAACAATCGCGCTCTGCTGAAGCGACTGGAGAAGAGCCC
GGGATCCGCATCCTCCGCATCCCGGCGATCGCCCTCCGATCACGGAAAGG
GCAAGCTGCCGGAGCAGCCGTCGCTACCGGGACTACCACATCCGATGAGC
TACTTCGCCAGCGATGCGCAGGTGCAAGGTGGAAGTGCGGCACCCGCGCC
CTTCCCGCCATTCCATCCGAACTACATGAACGCGGCCCTGCTCGCCTTTC
CCCACAACTTTATGGCGGCTGCAGCTGGCCTGGATCCTCGGGTGCATCCC
TACAGCATCCAGAGGCTGCTGCAACTTTCCGCCGCCGGTCAGCAGCAGAG
GGAGGAGGAGCGTGAGGAGCAGCAAAAGCAGCAGCAGCATGATGAGGAGG
AGACCCCCGATGAGCCCAAGCTAGTGATGGATATCGAGGAGCCAGAGACC
AAGGAGATGGCACCCACGCCAGAGGCCACCGAAGCAGCCACTCCCATTAA
GCGGGAGGAGAGCAGGGAAAGCCTCTCCCGATCCAGAGAGCTACCGTTCC
TCCTCGCAAGCAATCAAACAAGAGCAGAGCCCCTGAACGTAGCAGAGGAC
GTCAAACTCCTGTGGAAGACACGCCCCCGTGAGCATGCCGCTGATCTGCG
CTGCAGTCGCTGCTCCAGCAGTTCAATCATCCCACTGAGCTGGTGCAGCA
CGAGAAGGTGCTTTGTGGCCTGATCAAGGAGGACTGGAGCAGCACTTCAC
GCCAACAGCCACGTTCTTTGGCTGGCCCCCGCCAGGAAAGACAGAAACCA
GGAATGGATGTGGAGAAGGACCCCCGCAGATGCACGAGTCCGGTCAACGC
CTTACGAGAGACACACCGCACTTGAAACACCACCA
FMO05307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zfh1-RA | 3560 | CG1322-RA | 343..1497 | 39..1177 | 5220 | 97.8 | Plus |
| zfh1-RB | 6522 | CG1322-RB | 1329..2434 | 88..1177 | 4975 | 97.7 | Plus |
| zfh1-RE | 6522 | CG1322-RE | 1329..2434 | 88..1177 | 4975 | 97.7 | Plus |
| zfh1-RA | 3560 | CG1322-RA | 2425..2533 | 201..309 | 200 | 80 | Plus |
| zfh1-RB | 6522 | CG1322-RB | 3362..3470 | 201..309 | 200 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30783941..30784956 | 88..1098 | 4735 | 99.3 | Plus |
| 3R | 32079331 | 3R | 30783600..30783650 | 39..89 | 255 | 100 | Plus |
| 3R | 32079331 | 3R | 30786042..30786150 | 201..309 | 200 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:46 has no hits.
FMO05307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:33 Download gff for
FMO05307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zfh1-RA | 333..1414 | 28..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:21 Download gff for
FMO05307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zfh1-RA | 333..1414 | 28..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:57 Download gff for
FMO05307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zfh1-RA | 333..1414 | 28..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:57 Download gff for
FMO05307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30783590..30783650 | 28..89 | 92 | -> | Plus |
| 3R | 30783943..30784963 | 90..1109 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:33 Download gff for
FMO05307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26609312..26609372 | 28..89 | 92 | -> | Plus |
| arm_3R | 26609665..26610685 | 90..1109 | 98 | | Plus |
