FMO05308.5prime Sequence
1231 bp (930 high quality bases) assembled on 2008-08-22
> FMO05308.5prime
AGCATACATTAAACGAAGTTATCAGTCGACATGTCGGGCGGACGTGATAG
CAGTACCAGTAGCGGGAGCAATTCTGCTGCGCCAGGGGCCAGTACGAATG
CCACCTCCTCCGCATCCGCATCCGCCTCCTCCACATCCACATCCGCATCC
CCTGGAAGTACAACATCGCCCGCGTCCACGCAACGGCAACGAGGTAGACC
GGCCAAACGAGCCACATGCACCTGGTGCGGCGAGGGCAAGCTACCGCTGC
AGTACGTCCTGCCCACGCAGACCGGCAAGAAGGAGTTCTGCTCGGAAACA
TGCATTGCCGAGTTCCGCAAGGCGTACAGCAAGGGGGCGTGCACCCAGTG
CGACAACGTCATCCGCGATGGGGCGCCCAACAAGGAGTTCTGCTCGATCA
TGTGCATGAACAAGCACCAGAAGAAGAACTGCTCGACCAGGCACAGCGGC
GGATCGGCATCGGGCAAGGGTCTGGCGGAAAGCGAGCGCAAGTTGCTGGC
CAGTGGAGCGCCCGCACCAACGGGGCCCTTTCAATACGAGAGCTTCCACG
TCTTCGACTGGGATGCCTATCTAGAGGAAACGGGTAGCGAAGCTGCTCCT
GCAAAATGTTTTCAAACAGGCTCAGAATCCTCCCAACAATGATTTTAAAA
TCGGAATGAAGCTGGAGGCTTTGGATCCGCGCAACGTCACTTCCACCTGC
ATTGCCACCGTGGTCGGAGTGCTTGGCTCCAGACTGCGGCTACGCCTGGA
TGGGAGTGACTCCCAAAATGACTTTTGGCGGCTGGTCGATTCTACGAGAT
CCATGCTATTGGACACTGTGAAAAGAACGGTGGCATGCTGCAACCGCCTC
TGGGATTCCGCATGAACGCATCCAGCTGGCCCGGCTATCTGTGCAAGATC
TTCACATGGCCATGGTGGCGCTAGAAAAAATCCTCCAGCCGAAGCCGCCA
AACTCAGAAGAATACCTGGTTCAAGGGGGTCCGAAACTCCGAGCTGTCAC
AAGAAAACCCGCAGCTCAATCTGCTGGCCAAAGTAATGCAACCAGGATGA
TCGATCCAGTGTACATCGATGGTGGCAGGGGCAATCCACTACGGGGGCAT
TTACGATCGCGTGAACTTTTTCCGCGCGGCTGGGGCCCTAAGTGGCATTC
CCATCACCCCAGCTATTTCGCACATGGATCCCACTCTAACCACGCGTCTT
TATACCCCGTCTACCACGTATGTGTGAACCG
FMO05308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scm-RB | 3767 | CG9495-RB | 456..1576 | 30..1140 | 4635 | 95.4 | Plus |
| Scm-RA | 4069 | CG9495-RA | 456..1576 | 30..1140 | 4635 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9636609..9637156 | 577..30 | 2740 | 100 | Minus |
| 3R | 32079331 | 3R | 9636107..9636553 | 1018..575 | 1600 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:20 has no hits.
FMO05308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:41 Download gff for
FMO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 452..1349 | 30..926 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:23 Download gff for
FMO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 452..1349 | 30..926 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:31 Download gff for
FMO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 456..1353 | 30..926 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:31 Download gff for
FMO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9636201..9636551 | 577..926 | 97 | <- | Minus |
| 3R | 9636610..9637156 | 30..576 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:41 Download gff for
FMO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5461923..5462273 | 577..926 | 97 | <- | Minus |
| arm_3R | 5462332..5462878 | 30..576 | 100 | | Minus |
