FMO05309.5prime Sequence
1094 bp (954 high quality bases) assembled on 2008-08-22
> FMO05309.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCGGTGGTCG
CGACGGCCGAGGGAACTACGGACCCAATTCACCGCCAACGGGAGCATTGC
CTCCGTTTTATGAGAGCCTCAAGAGCGGCCAACAGAGCACGGCCAGCAAC
AATACGGGCCAAAGTCCCGGCGCTAATCATTCGCATTTCAACGCAAATCC
AGCGAATTTTCTGCAAAACGCAGCAGCGGCTGCGTACATCATGTCGGCAG
GTTCCGGTGGAGGAGGCTGCACCGGAAACGGAGGTGGTGGAGCATCGGGG
CCAGGAGGTGGCCCATCGGCAAATAGTGGTGGTGGTGGTGGTGGTGGCGG
CGGCAATGGGTACATCAACTGTGGTGGTGTTGGTGGTCCAAACAATAGTC
TCGACGCCTACGGCATAATACTCAAGGATGAACCGGACATTGAGTACGAC
GAGGCCAAGATCGATATTGGCACCTTTGCGCAGAACATTATCCAGGCAAC
GATGGGCAGCTCCGGTCAGTTCAATGCCAGCGCCTATGAGGATGCTATAA
TGTCGGACCTGGCCAGTTCGGGTCAGTGTCCCAATGGAGCCGTCGATCCG
CTTCAGTTCACAGCCACTCTGATGCTGAGTTCGCAGACCGATCATTTACT
GGAGCAGCTGTCCGATGCCGTGGACTTGAGTTCATTCCTGCAAAGGAGCT
GCGTGGACGACGAGGAGTCCACCAGTCCGCGGCAGGATTTCGAGCTGGTG
TCCACGCCCTCGCTAACGCCGGATTCAGTGACGCCGGTGGAGCAGCACAA
TACCAATACAACCCAACTGGATGTCCTGCACGAGAATCTGTTGACGCAGC
TGACCCCACAATATAGTCCGGGGCGGCAGCATCAGCAGCAGCAGCACCAT
CAACAGCATGTGTGCACAGCAACAGCACCAGCACATAGTGTGCAACAGCA
ACAGCACTCATGTTGCAACAGCAGCATGGCGTGCACCACACATGTCTAGC
AACATCACTGCCTGTTCACCATGCACGCTTGGCCTGATGATGCACACAGA
CCGCAGCACGGCGCTATCACAGCAACTGCATCATGTCCAACAGC
FMO05309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RA | 5946 | CG6824-RA | 1170..2244 | 37..1094 | 4650 | 96.8 | Plus |
| ovo-RE | 6763 | CG6824-RE | 2890..3595 | 406..1094 | 2805 | 95.2 | Plus |
| ovo-RD | 5948 | CG6824-RD | 1698..2403 | 406..1094 | 2805 | 95.2 | Plus |
| ovo-RE | 6763 | CG6824-RE | 2362..2731 | 37..406 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5066072..5066655 | 406..985 | 2520 | 97.8 | Plus |
| X | 23542271 | X | 5065544..5065913 | 37..406 | 1850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:54:14 has no hits.
FMO05309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:38 Download gff for
FMO05309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RA | 1165..2244 | 31..1094 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:24 Download gff for
FMO05309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RD | 1165..1539 | 31..406 | 99 | -> | Plus |
| ovo-RD | 1699..2403 | 407..1094 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:49 Download gff for
FMO05309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RA | 1165..2244 | 31..1094 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:49 Download gff for
FMO05309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5065539..5065913 | 31..406 | 99 | -> | Plus |
| X | 5066073..5066777 | 407..1094 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:38 Download gff for
FMO05309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4959572..4959946 | 31..406 | 99 | -> | Plus |
| arm_X | 4960106..4960810 | 407..1094 | 95 | | Plus |
