FMO05310.5prime Sequence
1243 bp (1053 high quality bases) assembled on 2008-08-22
> FMO05310.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGCCATTG
TCGATGGCCAGTGCGGAGGCCAAGCAGCTCCAGCGCAATATATCATTGTC
CATGTCGCCAGCGAATGGAGGAGTCATCTCACCATCTACCGCGAATTGCA
ATGGTGTTGCCTCTGCCTCCGGCGGAAATCCAAATCCCAACAGCCTCCTC
ACACTAGCTCCGCGCAAGGAGGAGCTACGCTTCCTGCCCCTGGCGCCCAT
GGGCGGCAACAAGACCTGCAACATCACCATCAGCAATGTCCAGCCAATGA
AATCCAAACTAAAGTCGGTCAACATAGTGCCAAATTCCATAAAGTCCGCT
GGAGCTGGCGCCACTGTCGGATCAGCAGATGCTCCCCTGTTCCAGCTGGT
GCCATCGCCCAGTAATCCCAGCCAACCGTTGGTGGCCATTCTGGCCCCCA
ATCGCAAGACCACGCTGCTTGGCGGAGGTGCATCCAATGGCCAACCGGTG
GTCATACGCTCCGGAACACCTTTGCACAAGAACAGCCTGACCGTTGAGAC
CAGCAACAAGCCCATCCAGCCAGGAGGATCGGCTGCAGCAGCCGCCGTTG
GAGGCGGAACTGGAGGAGCACCTTTAACGCTCGTGGGCAAAACGGTCGTT
CCACCGAAAATACAAGCGGCGACACCTGTCCAGATTCCCAGCACGGGTCC
GGGTGCGCAGGTATCCCTGCTGGCCAATCCCCTCAAGCCACGTGCTCCAC
TCATACTCAGCAAGGTGGCGGTGGATAAGCTGCGTCTAAAGTTCAGCCAG
GTCAAGAGCAACCAAATGCACTCGTTTCTCGGCAGGCCAATCATGTGAAG
AAACTTCTGACATCGCCGAACCCAGTGGAGAGGATAGACCAGGAGCCCCC
AGAAAAACAACAACAGAATACTAGTGCCAGCCAACTGAAGTCAGTTGTGG
CACCCAAACGGCTTTGCCCATTGCAACGGAGTGCCGACCGCCGATACACA
AATGAGCCTAATTAAGTCCAAGCCCGGTGCCATCAAGGCATGTGCCGCTG
CCCAGCAGAAAGCGCCATGTGCGGCAATGGCGCCAGTTGTACATCTCAGA
GAAGGTCACGTTAGGCCCACTGCAAGGCCTCAATCAGAACGCACCATCAT
CCTAAACCTCTGGGAATGGTCGTATGGACACCAGAAACATGGTGTCCTGC
AGGACTAACGAAACAGTGAACAACACCGCGGGCTCAGAACAAT
FMO05310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)mbt-RB | 5398 | CG5954-RB | 788..1901 | 39..1136 | 4930 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27271143..27271773 | 669..39 | 3155 | 100 | Minus |
| 3R | 32079331 | 3R | 27269899..27270374 | 1129..669 | 1345 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:26 has no hits.
FMO05310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:26 Download gff for
FMO05310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbt-RB | 783..1945 | 34..1174 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:01 Download gff for
FMO05310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbt-RA | 570..1732 | 34..1174 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:30 Download gff for
FMO05310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbt-RB | 783..1945 | 34..1174 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:30 Download gff for
FMO05310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27269847..27270373 | 670..1174 | 91 | <- | Minus |
| 3R | 27271143..27271778 | 34..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:26 Download gff for
FMO05310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23095569..23096095 | 670..1174 | 91 | <- | Minus |
| arm_3R | 23096865..23097500 | 34..669 | 99 | | Minus |
