FMO05311.5prime Sequence
1193 bp (990 high quality bases) assembled on 2008-08-22
> FMO05311.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGCTAACA
ACTGAACACATAATGCATGGGCATCCCCACTCGTCAGTCGGGCAGAGTAC
TCTATTTGGGTGCTCCACGGCGGGCCATAGCGGAATAAATCAGCTGGGCG
GCGTATATGTTAATGGCCGGCCACTGCCCGATTCAACGCGTCAAAAAATT
GTCGAATTGGCTCATTCCGGCGCACGTCCTTGTGATATTTCAAGAATACT
ACAAGTGTCCAACGGTTGCGTAAGCAAAATTTTGGGCAGATATTATGAAA
CTGGATCGATAAAACCTCGAGCTATAGGTGGTTCAAAGCCACGAGTAGCT
ACAACCCCGGTTGTGCAAAAAATTGCAGATTACAAACGGGAATGTCCCAG
CATATTTGCGTGGGAAATACGAGATCGACTGCTATCGGAACAAGTTTGCA
ATAGTGATAACATTCCAAGTGTTTCATCTATTAATCGAGTCTTACGTAAC
CTGGCCTCACAAAAGGAGCAGCAAGCTCAGCAACAAAACGAATCCGTTTA
TGAAAAGCTTCGCATGTTTAATGGCCAAACGGGCGGATGGGCATGGTATC
CAAGCAATACAACGACGGCACATTTGACGCTACCACCAGCAGCTTCCGTT
GTGACATCTCCTGCAAATTTATCAGGACAGGCCGATCGGGATGATGTTCA
AAAAAGAGAATTACAATTTTCAGTAGAAGTTTCGCATACAAACTCTCACG
ATAGTACATCGGATGGAAACTCTGAACATAATTCATCCGGGGACGAAGAC
TCTCAAATGCGGTTGCGCCTAAAAAGGAAGTTACAGCGCAATCGGACATC
ATTTTCTAATGAGCAATTTGACAGTCTTGAAAAAAATTTGAAAGAACACC
ATTATCCCGATGTTTTGCGCGAGAAGGCTTGCTGATAAATTGGTTTGCAA
GAGCACGTATTCAGTTTGGTTTCAAACCGACGAGCTAATGGCGCCGAGAA
GAAAATGCGAACTCAAGACGATCGCGATACGTGACGCATTGGTCGAACAG
CCGGCAATATCTCAGAACACTGCATCTTCTCGTCCACGTCAAACACCTCG
ACTCAGGAATGTGCACTCCGCATCACGTTGCCGAACGGACACTTCTCGCT
ATAGAATTGCCTCAGAGCTCAATGACCACCTCTGTGTAGGTTT
FMO05311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toy-RA | 2287 | CG11186-RA | 528..1661 | 39..1141 | 4745 | 96.3 | Plus |
| toy-RC | 3870 | CG11186-RC | 528..1649 | 39..1141 | 4625 | 95.6 | Plus |
| ey-RA | 3282 | CG1464-RA | 622..1024 | 122..524 | 505 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 990252..990502 | 39..289 | 1255 | 100 | Plus |
| 4 | 1348131 | 4 | 996512..996749 | 471..708 | 1190 | 100 | Plus |
| 4 | 1348131 | 4 | 992064..992248 | 288..472 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 997705..997882 | 707..884 | 875 | 99.4 | Plus |
| 4 | 1348131 | 4 | 710925..711074 | 132..281 | 285 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:36 has no hits.
FMO05311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:32 Download gff for
FMO05311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 528..1501 | 39..1005 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:03 Download gff for
FMO05311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 525..1498 | 39..1005 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:35 Download gff for
FMO05311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 528..1501 | 39..1005 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:35 Download gff for
FMO05311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 990246..990502 | 30..289 | 97 | -> | Plus |
| 4 | 992066..992246 | 290..470 | 100 | -> | Plus |
| 4 | 996512..996749 | 471..708 | 100 | -> | Plus |
| 4 | 997707..997883 | 709..884 | 98 | -> | Plus |
| 4 | 998623..998705 | 885..964 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:32 Download gff for
FMO05311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1010872..1011128 | 30..289 | 97 | -> | Plus |
| arm_4 | 1012692..1012872 | 290..470 | 100 | -> | Plus |
| arm_4 | 1017138..1017375 | 471..708 | 100 | -> | Plus |
| arm_4 | 1018333..1018509 | 709..884 | 98 | -> | Plus |
| arm_4 | 1019249..1019331 | 885..964 | 92 | -> | Plus |
