FMO05312.5prime Sequence
631 bp (631 high quality bases) assembled on 2008-08-22
> FMO05312.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACATCGAAAA
AACGAAAAACACTGTTGGATGCCGATGACGACAATGACAATTTTGATGAA
GACGATTCGGGCTCCGATTTCGACGATGACGAGGATCCAGATCAAATAGA
AGTGCCCGGTGGAGGTCGCGATTTGAACACAGCCGTTACGTACGCCCAAA
ATATCCGTAGCGGAGTGGGCGTGGCGCCCAAAGGCGGTATACCCATACCC
ATAAGTGGGGCGAAAATTGTTGTTGGTAATAATAAAATCAAGCCAATATT
GTTGTTGCGCATTAACAACAATAACAACAATATAGTCACCAGTGTTAACA
ATAGAAACAACAACAATATCATCAGCACCAACGGCAGCAGCAATAACAAC
AACAATAGCATCAACAACAACAGCCAGATAATAAAAACAACAACAGTAAC
AACAACACCAACCACTGTGGGTGCTACGCCAACAGTTGGAGGCGTGGCAC
TGGGCGGAAAGCTAACAGTGATACCGATAGCAGGGAGAAACGTAGCCCTA
GATAATAATTTAAGCAATATGCCAAAGAAACTGAATAACATGGTAACGGG
TAAGTGCATTAAAGCAAGCTTTCTAGACCAT
FMO05312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sno-RB | 6315 | CG44436-RB | 573..1134 | 38..599 | 2780 | 99.6 | Plus |
| sno-RA | 5997 | CG44436-RA | 573..1134 | 38..599 | 2780 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13203699..13204151 | 610..158 | 2235 | 99.6 | Minus |
| X | 23542271 | X | 13206709..13206830 | 161..40 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:38 has no hits.
FMO05312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:29 Download gff for
FMO05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sno-RA | 568..1142 | 33..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:05 Download gff for
FMO05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sno-RA | 560..1140 | 33..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:53 Download gff for
FMO05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sno-RA | 568..1142 | 33..609 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:53 Download gff for
FMO05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13203695..13204150 | 159..613 | 99 | <- | Minus |
| X | 13206712..13206829 | 41..158 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:29 Download gff for
FMO05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13097728..13098183 | 159..613 | 99 | <- | Minus |
| arm_X | 13100745..13100862 | 41..158 | 100 | <- | Minus |
