FMO05313.5prime Sequence
1184 bp (973 high quality bases) assembled on 2008-08-22
> FMO05313.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGCGCCTTCAAA
AGTAGCAGCTAAGCCAGCAGGAGCAGCCAAGGATTCCCAGTGTGCGGAGG
AGTCGGGACCACCCGACTCACCCGCTTTCATACTCGCCCTGGATGTTGGC
ACCACCTGCGTGCGGAGCTTCGTTCTGGACGAACAATGCGAAGTCCGGGG
ATCGGCGGTGGATGCTGTGGAGCTACTGAACCCGCAGCCAGGCTATTTCG
AAATCGAACCCGAGAGCTTGTGGCGGAAAATCGTTGGCGTTATAACGCAG
GCAGTAAAAAATGCTCAACTGACACCACCGGACATCACCTGCCTGACCAT
CTCCACGCAGCGCTGCACGTTTCTCACGTGGGATCATCGCAGTGGCGAGT
ACTACCACAATTTCATCACCTGGAAGGATTTGCGCGCCGACGAGCTGGTT
GACCAGTGGAATGCCAGCTGGACGAAGAGCTCCATGAACTGGTTCTCGTA
TGCCCTGTTCCTTCTCACCCGCCAGTCACGATTCCTCGCCGGCAGCGTTC
TCCAACTGATGAATGGCCAGGTCACTCCAAGGCTACTCTTCGAGATAATG
AACAACAAGAAGTTGAAGCAGGCTCTGATGCAGAAGAAGGCGCGCGTGGA
GCTGTTGGACTCGTGGATCCTGCACAAGCTAAGAACTGGCAGCAGTCGCG
ATAAGGATGTGGAGCACATAACCGATGTGACCTCGAGTACGGCGACGGGT
TTGTACGATCCGTTCACGCTCAGCTGGTCGCCGCTTATAAGCTGGCTATT
CGGCATCATTCAAAAATCTTGCCGCGTGTGATGGACAACGGCTACAAGGC
CTTGGGCATGTGCATCCTACTGCCTTCGGTCCGATTGGGCCAACACAGAG
ATACCCATTGCTGCTCTTTAAGTGACCAAACAGCAGCAATTTGGGGCTCG
CAGTGTTTCCAGAAGACGACGTCAGTCACAATGGGTACTGTGCGTCTATC
TGTACAGCATCGTGCCAGCTGTCATCTCTGCATGTATCATGTGCTGCAGT
CAGACCACAGGCAGCAGAACCTGTCTACTGCATGAGAACTCATGACTTGG
AACTGTCATGGCGCAATCTGCAGACCATCTCGAGTCGACCTAATTGCATC
GTCATCACAGTGGTTCTTAGCGGCTCATTGGCCC
FMO05313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1271-RA | 1776 | CG1271-RA | 14..1039 | 32..1038 | 4640 | 97.9 | Plus |
CG1271-RC | 2057 | CG1271-RC | 421..1261 | 217..1038 | 3715 | 97.4 | Plus |
CG1271-RB | 1998 | CG1271-RB | 421..1261 | 217..1038 | 3715 | 97.4 | Plus |
CG1271-RC | 2057 | CG1271-RC | 159..345 | 32..218 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3053241..3053738 | 311..808 | 2490 | 100 | Plus |
3L | 28110227 | 3L | 3052672..3052858 | 32..218 | 935 | 100 | Plus |
3L | 28110227 | 3L | 3053798..3053984 | 810..990 | 625 | 95.2 | Plus |
3L | 28110227 | 3L | 3052934..3053027 | 217..310 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:17 has no hits.
FMO05313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:21 Download gff for
FMO05313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 14..1047 | 32..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:31 Download gff for
FMO05313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 14..1047 | 32..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:27 Download gff for
FMO05313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1271-RA | 14..1047 | 32..1046 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:27 Download gff for
FMO05313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3052672..3052856 | 32..216 | 100 | -> | Plus |
3L | 3052934..3053027 | 217..310 | 100 | -> | Plus |
3L | 3053241..3053740 | 311..809 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:21 Download gff for
FMO05313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3052672..3052856 | 32..216 | 100 | -> | Plus |
arm_3L | 3052934..3053027 | 217..310 | 100 | -> | Plus |
arm_3L | 3053241..3053740 | 311..809 | 99 | -> | Plus |