FMO05314.5prime Sequence
1230 bp (1049 high quality bases) assembled on 2008-08-22
> FMO05314.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAAAATAT
CCACTTGTCAAAGAATTTATGGGGCAAAATTGGCCAAAAGATACCAAAAT
GGCGCAGCTCGAGAAGGAACTCAAGAAAAGGAAAGAATTGATCGTCGAGG
AGCAGATTGTAGGGCCGCGTTTGGAGCAGGTGCTATTCGACCTGACCTTG
GTCAAGCAGTGCGCCTTGGTAGTGGAGGATAACGGTGCCGGTATGGCACA
GGCCAACACCATGATACAGGACTGTATGTTCCAGATCACGCGAATTGAGG
AGCTGCTCGAAATGGCCGGGCTGCAGGACATCCTCTACTACACGGTGCAT
CGCAAGGAGCAGGAGTTCCAGCGCAAAATTAAGCTGCAGGAGGATTTGGC
CGAGCAAGAGAATCAGCAGAACACAATCCTCGAATCGCGCAGCATCGTCC
AGGAATTCCGAAAAGAGCAAGCCTTAAAAAAAGAGGCAGATAAGGAGCTA
GCCTCAGTGGACGACCAACTGGACCAGTCGGATCGCGAGTGGACAATTAC
GCTGAGAAGTATGACGGATAAGCTTAATAAGAAGATAGTCAGCGTTTTAC
AGATGGGAAAGCTGATAAACGAATTGAAGGAAGAGTTGCAAAAAAGGAAT
TTGATTAAAACGGGTGTCACTAAGGGCGCTGAACCAAGTTTGGCTGGTGT
TCCATCCGCTAGCACCATTTCACCATTTCAGTCCGCTTCGGATTTCCTCA
ACAACTTCATCTTTAAGAATATCAGACCAGATGACAATAAATCCATGACG
AGCGTGAATAGAGAGATCACTACTAAGAAGCTGGAGACTCCTCTGCGATC
CATTTTGATCAAATGCAAGGAGGTCGAGTCTGTTGCCATTTCCAACTCGC
CAACAAAGCAAGTGCGTTTTTCTCCCTATCCAGAGATAGCCATATCGAAG
AGGAGAAATTTGAGAGACCGATTGCTTTCTCCTTCAGAGAGGCAGTGTCC
CAATGCGATTAGAGAGACAGTGACGAATGAGCCACGACGAGATTTGAGGA
ATATCAAAGAAGAATTCGAATGCGCTGAGATGAGATTGGACAGAGTAAAG
TAAAAGTCGAAGGTTGCATCTAAACCGATAAATTGATGAAATCTGCCAAG
TCAAGAATCGATCGATACAGATCGAGGAGGCTCGGAGAGAGGACCGGTTG
ATCGCCACACAGTAAATCTGGGGAACCGCG
FMO05314.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8316-RA | 1984 | CG8316-RA | 49..1098 | 39..1070 | 4810 | 98.3 | Plus |
| CG8316-RB | 1978 | CG8316-RB | 49..1092 | 39..1070 | 4710 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17630774..17631131 | 988..634 | 1640 | 99.2 | Minus |
| X | 23542271 | X | 17631527..17631817 | 447..157 | 1455 | 100 | Minus |
| X | 23542271 | X | 17631182..17631370 | 635..447 | 945 | 100 | Minus |
| X | 23542271 | X | 17631882..17631999 | 156..39 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader6 | 4885 | invader6 INVADER6 4885bp | 1076..1139 | 65..128 | 140 | 68.8 | Plus |
| TART-A | 13424 | TART-A 13424bp | 5820..5869 | 596..645 | 115 | 70 | Plus |
| P-element | 2907 | P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). | 2171..2320 | 942..1083 | 110 | 58.8 | Plus |
FMO05314.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:40 Download gff for
FMO05314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8316-RA | 49..1113 | 39..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:32 Download gff for
FMO05314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8316-RA | 22..1086 | 39..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:50 Download gff for
FMO05314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8316-RA | 49..1113 | 39..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:50 Download gff for
FMO05314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17630662..17631129 | 636..1086 | 95 | <- | Minus |
| X | 17631182..17631369 | 448..635 | 100 | <- | Minus |
| X | 17631527..17631817 | 157..447 | 100 | <- | Minus |
| X | 17631882..17631999 | 39..156 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:40 Download gff for
FMO05314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17524695..17525162 | 636..1086 | 95 | <- | Minus |
| arm_X | 17525215..17525402 | 448..635 | 100 | <- | Minus |
| arm_X | 17525560..17525850 | 157..447 | 100 | <- | Minus |
| arm_X | 17525915..17526032 | 39..156 | 100 | | Minus |
