FMO05315.5prime Sequence
1255 bp (1054 high quality bases) assembled on 2008-08-22
> FMO05315.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGCCTCCA
AGGAGGGCAAGGAAAAGAAGGGCAAGCTGCTGGGTGTGGAAAACATTTCG
CCGCCTAAGGACAAACGTCCCGCCACCAGGATGAAGCTCTTGAATGACGT
GGGAGCTGGTGAGGATTCGGAGGCAAGCACTACTACTACCACATCAAGAA
CTCCCTCCAACAAGCAGGAGAAGCGTGGCAGTGTCGCTGGATCGCGCATC
AAAATACTCAATGAAGAAATACTGGGCACTCCGAAAACTGAGAAACGGGG
CGCCACAAAGAGCACAGCTCCGGCTGCTTCCACTGTGAAGATTCTGAACG
AGAAAAAGACACCCAGTGCTACCGTGACAGCCGTGGAAACTACCAAGATC
AAGACGTCTCCCAGTAAAAGAAAGAAAATGGAGCACTATGTACTTCAGGC
TGTGAAATCAGAAAATACCAAGGCGGACACCACGGTTACCGTGGTCACCG
AAGAAGATGACACCATTGATTTCATTCTAGCGGATGATGAGGAAGTAGTT
CCGGGCAGAATAGAAAATAACAACGGCCAGGAGATCGTTGTCACCGAGGA
CGATGAGGATCTAGGGGAGGATGGTGATGAGGACGGTGAAGACTCCTCAG
GCAAGGGCAACTCTAGCCAGACAAAGATCAAGGAGATCGTGGAGCATGTG
TGTGGCAAATGCTACAAGACCTTCCGTCGCGTTCAGAGTCTGAAAAAGCA
TCTAGAGTTCTGTCGCTATGACAGTGGGTATCATTTGCGCAAAGCCGACA
TGCTTAAGAACCTGTAGAAGATCGAGAAGGATGCCGTGGTGATGGAGAAG
AAGACATATGCTTCTGCTGCAGCGAAAGTTACGACACCTTCCATCTGGGT
CACATTAACTGTCCCGACTGCCCCAAGTCGTTTAAGACACAGACCAGTTA
CGACGCACATTTTCATCACTCACTCGAGTCAGCGATTTCTTGCTCATTTG
CAATGCAACTGCGCAGCGAGGCTTGTTGGCGCTCCACGAGAACAGCAAAG
TCACGTGGCAAGCGTATGCATGCAGATCTGCGCAGACTCACCCGCTCGTA
CAATTGGAGGCCAACAAAGTACTCATCTGTTCTCATCGAACGAACCGATA
CATGAACTGCAGGGTGGGATTGTGTCCTCTACGTTGACCTGGAATGCATA
GGAGGCATGGGTTACACAGTGTTAAGCGGAGAATCATGTGCCACCACGCG
TCTGC
FMO05315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(Hw)-RC | 3682 | CG8573-RC | 502..1672 | 36..1181 | 5070 | 96.9 | Plus |
| su(Hw)-RB | 3508 | CG8573-RB | 328..1498 | 36..1181 | 5070 | 96.9 | Plus |
| su(Hw)-RA | 3260 | CG8573-RA | 80..1250 | 36..1181 | 5070 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14307098..14307957 | 894..36 | 4235 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14306839..14307039 | 1074..887 | 370 | 90.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:54 has no hits.
FMO05315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:21 Download gff for
FMO05315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RA | 50..1211 | 27..1166 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:34 Download gff for
FMO05315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RB | 318..1479 | 27..1166 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:10 Download gff for
FMO05315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RA | 72..1233 | 27..1166 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:10 Download gff for
FMO05315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14307098..14307965 | 27..894 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:21 Download gff for
FMO05315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10132820..10133687 | 27..894 | 99 | | Minus |
