FMO05316.5prime Sequence
1224 bp (876 high quality bases) assembled on 2008-08-22
> FMO05316.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGATGGCGCTCGACGGC
AAGGCGATAATTAAGGAGGAGATTACCGACAAGGACGCTTACGACGCAGC
TGCGGCGGCGGCAGCGGCGGTGGCAGCGGGAGCCGCTCTGGCGGTGGCCT
CTGCTGCGGCCGTCCAGGTGCCACCCGCGTCATCGTCCTCGGCGGGATCA
GCGTCATCGGCAGCCGCCGCGGCCACCAACAACACAACATCGGCGGCAGC
CACAGCGGCGGCAATTAGTCGTCGGCTTAAAGCCAGCAGCAGCGGCGGGG
ACAAGAGCTCCACCTCATCCTCGAGCAGCAAGGACAGCAGCCACACCTCC
AGCAGCAGGAGCGAGAGGGACAGGGAGAGGGAGCGAGAACGGGAGCGGGA
ACGCGACCGCCTGTGCCGCACTCCGCCGGACTCTCCGCCGGACAGCTCGC
GCAGCCTGGCCCCCCGCTCGCCCCACTCCCCACTACAGTTGCACCAGCAT
CCGCAGCGCAACGCCAGCGTTTCCCCGGTGGTCAATGGATCCTCCTCGGG
TGGAGGAGGCGTGGGATCCTCCGGCACTTCGCCTACGCCCACACCGGGCA
GTCAGCATGCCGCCTCCTTGGCCGCAGCCGCCGCCGCCGCTGCAGCCGCC
CACGTGGAGCAGGCGCGACTGGTTTCCAAGATGCGCAAGTTCCTGGGGCG
CCCTGATCCAATTCTCCCAGGAACTGGGGACAGCCGGAGGTGTGCGAAAG
GGTGCGCGACCCTGGTGCTGTCCCTCTGCAGCGGCAGCATCTTCCGTGGA
GGAGTTTCCGGCTGGCCCTGCAAGGAGGCCATCAAACTTGCCACTCCGGG
CCCTATGTTGGTTCCGCTCCTTAAAAAACAGCATCGCTTCTGGTTGCAGC
GGGAAATTCTGGCACCTTGCCAAGAGCCACCAACAATCCGCCCTGCAGGA
AGTGAACAACAACGAGCAGCGGTGATGGAGTCCGCTCCCCACGGAGTGGA
CAGTGCCGGTTCGGGACATATCATCAGCTGGAGCATCCACATCAACGGCA
GCAGTGCGTCTTCAGTGCCGCTCTCGATTCAATGAATGGACATGAGCCAA
CGGCTGAGAATGAAACGAATACATGACATGGCGTACTGGCTTACCCTCAC
CGTCCACAAGGCCCTCACCGATCCGCCCTGGGGTACATATGGATATAAGG
ATTACTTAATGGAAAGAGGGTCTC
FMO05316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 3426 | CG3385-RD | 396..1432 | 33..1073 | 4475 | 96.6 | Plus |
| nvy-RA | 3426 | CG3385-RA | 396..1432 | 33..1073 | 4475 | 96.6 | Plus |
| nvy-RC | 3104 | CG3385-RC | 76..1110 | 35..1073 | 4465 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24288023..24288738 | 281..1008 | 2720 | 96.3 | Plus |
| 2R | 25286936 | 2R | 24284827..24285074 | 35..282 | 1240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 559..717 | 264..110 | 137 | 56.9 | Minus |
FMO05316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:48 Download gff for
FMO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 386..1500 | 23..1133 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:35 Download gff for
FMO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 383..1497 | 23..1133 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:02 Download gff for
FMO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 386..1500 | 23..1133 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:02 Download gff for
FMO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24284819..24285074 | 24..282 | 98 | -> | Plus |
| 2R | 24288025..24288879 | 283..1133 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:48 Download gff for
FMO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20172342..20172597 | 24..282 | 98 | -> | Plus |
| arm_2R | 20175548..20176402 | 283..1133 | 93 | | Plus |
