FMO05318.5prime Sequence
1273 bp (1069 high quality bases) assembled on 2008-08-22
> FMO05318.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGTCTCGACAC
GAACTCAAATGTGGACTTCAAAGCATTCGAATCCAGCTCAAGCTCATGTC
CTGTCAAATTGGATAACCTGGCCACCTGGGGTGGCTCACAGAAAACAGAC
ACACGACTGCCGATCACGGACTACTCCAATCTGGGCGGACCCCGGCACAA
TCGCAGTCCCTTTCCACTCTGCAAAGATGTCAACAATCGCTTCGTAATCT
GGGATGGGGACATGACCACTCTGGAGGTGGACGCCATCACAAACACCAGC
GATGAGACTCTGACTGAAAGCAATAGCATATCGGAGCGCATCTTCGCAGT
GGCTGGTAATCAGCTGCGCGAGGAGCTGAGCACAACGGTTAAAGAATGCC
GCACTGGCGATGTGCGCATCACGCGTGGATACAATCTGCCCGCCAAGTAC
GTGCTGCATACAGTGGCACCTGCCTACAGGGAAAAGTTCAAGACGGCTGC
CGAGAATACGCTGCACTGCTGCTACAGAAATGTCCTGTGCAAGGCGAAGG
AACTTAACCTGCACACCATCGCCCTGTGCAACATCAGTGCCCACCAGAAG
AGCTTTCCCGCGGATGTGGCAGCCCACATTGCCCTGCGTACCATTCGTCG
CTATCTGGACAAGTGCACCCTGCAGGTTGTGATATTGTGCGTGGGCAGCA
GCGAGCGCGGCACTTACGAGGTCCTGGCCCCACTGTACTTCCCCAGGGAT
CAGCTGGAGGAGCGCAGTGCCCTGTGGCAGCTGCCCAAGGACATTGGCGG
CGAGTTCGGGGAGCCGCAACATCCGGATCCCGATCGCCAGATACGCATCA
TCCGCAATCCGCAGCACAGTGTCCACATGCGTCATCATTTAGCCGACGAC
GATTCAGACGTGAGTCCACACGACATGGAGGGCAATAGTTCGGATCTGGA
GTACGGAGCTCGGGATATGACGGTCTCAGCCTGAATTCGTACAGCAGCGG
ATTGCAGCTCAGCTTCAGCGGGGATTTGGACCGGCAGCACTGCTCAGTGA
TCGACCACGCAACGGAGTTTACGAGAATTTCATTTCGAGGGAGTCGAGGC
AATGAGCCATCAGGAAGATACGAGCGCCTACTGGCGTCTGCCAAGTCGAG
ATTGACGGAGGGTTCCGAATCCGCCTGCTTACACAGAACGGCATGACGCC
TGTGGCCTGTGAAGTTGGTTCTGGCGCAATGATCCGCCCAGACCTTTGAC
ACTGGTAAAAGGCAGCGCGTCGC
FMO05318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-RC | 2689 | CG18812-RC | 251..1382 | 37..1161 | 5275 | 98.4 | Plus |
| CG18812-RF | 2894 | CG18812-RF | 474..1587 | 37..1161 | 5060 | 97.2 | Plus |
| CG18812-RD | 1719 | CG18812-RD | 137..412 | 893..1161 | 995 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7727942..7728196 | 892..638 | 1275 | 100 | Minus |
| 2R | 25286936 | 2R | 7729429..7729581 | 252..100 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 7729016..7729163 | 394..247 | 725 | 99.3 | Minus |
| 2R | 25286936 | 2R | 7728825..7728959 | 527..393 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 7728267..7728381 | 639..525 | 575 | 100 | Minus |
| 2R | 25286936 | 2R | 7725868..7725997 | 1018..891 | 550 | 98.5 | Minus |
| 2R | 25286936 | 2R | 7729642..7729704 | 99..37 | 315 | 100 | Minus |
| 2R | 25286936 | 2R | 7725708..7725786 | 1099..1023 | 250 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:28 has no hits.
FMO05318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:02 Download gff for
FMO05318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RC | 247..1388 | 30..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:39 Download gff for
FMO05318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RC | 244..1385 | 30..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:03 Download gff for
FMO05318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RC | 247..1388 | 30..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:03 Download gff for
FMO05318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7725868..7725995 | 893..1018 | 98 | <- | Minus |
| 2R | 7727942..7728196 | 638..892 | 100 | <- | Minus |
| 2R | 7728269..7728378 | 528..637 | 100 | <- | Minus |
| 2R | 7728825..7728957 | 395..527 | 100 | <- | Minus |
| 2R | 7729016..7729158 | 252..394 | 100 | <- | Minus |
| 2R | 7729430..7729581 | 100..251 | 100 | <- | Minus |
| 2R | 7729642..7729715 | 24..99 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:02 Download gff for
FMO05318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3613373..3613500 | 893..1018 | 98 | <- | Minus |
| arm_2R | 3615447..3615701 | 638..892 | 100 | <- | Minus |
| arm_2R | 3615774..3615883 | 528..637 | 100 | <- | Minus |
| arm_2R | 3616330..3616462 | 395..527 | 100 | <- | Minus |
| arm_2R | 3616521..3616663 | 252..394 | 100 | <- | Minus |
| arm_2R | 3616935..3617086 | 100..251 | 100 | <- | Minus |
| arm_2R | 3617147..3617220 | 24..99 | 93 | | Minus |
