FMO05320.5prime Sequence
637 bp (637 high quality bases) assembled on 2008-08-22
> FMO05320.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAGGAATAA
TGGACTCGGTGGAAATGCCCAAATTACCGGAAAACCAGAAGACCTTCGCC
GGCATCCCGGAGGCAGTGTTCCTGGAGGAGATCGACACCTTCATGTCGCA
GCCGGAGAACGAAAATTGCGAAAAGGTGCTGCAGCGACTGGACGAGCAGC
ACGGCAAGTATCGATTCATGGCCTGCAATCTGGAGGCGCGGCGGCGCAAG
TTGAAGTCTCAAATTCCGGACCTGGAGCGCTCCCTGGAAATGGTCAATGT
GCTTCGCAAGGAGGACGAGGAGCGCGAGACGCAATTCCTGCTCAGCGACC
AGGTGTTCATCAAGACACTGGTGCCGCCCACGAAAACAGTATACCTCTGG
CTGGGGGCCAGCGTGATGCTGGAGTATCCGCTAGACGAGGCGGAGGCTCT
GCTGAACCAGAACATCACATCGGCCGTGGGCAACCTAAAGTCCGTGGAGC
ACGATCAGGATTTTCTGAGGGATCAAATCACAACTACGGAGGTGAACATG
GCGCGGGTCTACAACTGGGGCGTGAAAAAGCGGCAGGCCGCTACCAAGAC
CACCGCCACTACCCCATCCGCAAGCTTTCTAGACCAT
FMO05320.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mgr-RA | 946 | CG6719-RA | 108..689 | 38..619 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11409209..11409605 | 520..124 | 1985 | 100 | Minus |
| 3R | 32079331 | 3R | 11409049..11409150 | 619..518 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 11409681..11409768 | 125..38 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:24 has no hits.
FMO05320.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:25 Download gff for
FMO05320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mgr-RA | 104..693 | 30..624 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:42 Download gff for
FMO05320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6719-RA | 106..695 | 30..624 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:30 Download gff for
FMO05320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mgr-RA | 104..693 | 30..624 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:30 Download gff for
FMO05320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11409045..11409148 | 520..624 | 98 | <- | Minus |
| 3R | 11409210..11409604 | 125..519 | 100 | <- | Minus |
| 3R | 11409682..11409776 | 25..124 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:25 Download gff for
FMO05320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7234767..7234870 | 520..624 | 98 | <- | Minus |
| arm_3R | 7234932..7235326 | 125..519 | 100 | <- | Minus |
| arm_3R | 7235404..7235498 | 25..124 | 93 | <- | Minus |
