FMO05321.5prime Sequence
690 bp (690 high quality bases) assembled on 2008-08-22
> FMO05321.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGGCCCAAAT
ACGCACCGTGGTGTCCCAAACGTTCCTGTGGCTCTTCCTCGCCGTGGCCA
CCATCCTGACCCTGTACTTCGTGATGACGGGCAAGGGCGAGCGGGTGAGC
GTGGGCTGGTTCCTGGCCTCCTCAAACCCGTACATGTGGGCCTGCCTGGG
CATCGGACTCTCCGTCTCGCTGTCCGTCGTGGGCGCCGCCCTGGGCATCC
ATACGACGGGCACGAGCATCGTGGGCGGTGGTGTGAAGGCGCCCCGCATC
AAGACCAAGAATCTGATCTCGGTCATCTTCTGCGAGGCCGTGGCCATCTA
CGGCCTGATCACCGCCATCGTTCTGTCCGGCCAGCTGGAGCAGTTCTCGA
TGGAGACGGCCCTTTCGCAGGCGGCTATTCAGAACACGAACTGGTTCTCC
GGCTACCTCATCTTCGGTGCTGGCCTGGCTGTCGGCCTGGTCAATCTGTT
CTGCGGCATTGCTGTGGGCATTGTGGGTTCGGGTGCCGCCCTCTCGGACG
CCGCCAATGCCGCCCTGTTCGTCAAGATCCTTATTGTGGAGATCTTCGGT
TCGGCCATCGGTCTGTTCGGCCTCATCGTGGGCATCTACATGACCTCCAA
GTCCAAGATGGGCGACAAGGAGGCAAGCTTTCTAGACCAT
FMO05321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaPPA1-1-RB | 1348 | CG7007-RB | 127..762 | 37..672 | 3180 | 100 | Plus |
| VhaPPA1-1-RA | 1352 | CG7007-RA | 131..766 | 37..672 | 3180 | 100 | Plus |
| VhaPPA1-2-RB | 672 | CG7026-RB | 471..621 | 501..651 | 395 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14903237..14903872 | 672..37 | 3180 | 100 | Minus |
| 3R | 32079331 | 3R | 14899657..14899807 | 651..501 | 395 | 84.1 | Minus |
| 3R | 32079331 | 3R | 14899927..14900154 | 381..154 | 345 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:33 has no hits.
FMO05321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:38 Download gff for
FMO05321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaPPA1-1-RA | 136..784 | 27..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:43 Download gff for
FMO05321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaPPA1-1-RA | 136..784 | 27..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:47 Download gff for
FMO05321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaPPA1-1-RA | 123..771 | 27..678 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:47 Download gff for
FMO05321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14903232..14903880 | 27..678 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:38 Download gff for
FMO05321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10728954..10729602 | 27..678 | 98 | | Minus |
