FMO05322.5prime Sequence
1229 bp (997 high quality bases) assembled on 2008-08-22
> FMO05322.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGACGGCGTTAAGG
TTGAGACGTTCATCAAAAGCGAAGAAAACCGAGCGATGCCCTTGATCGGA
GGAGGCAGTGCCTCAGGCGGCACTCCTCTGCCAGGAGGCGGCGTGGGAAT
GGGAGCCGGAGCATCCGCAACGTTGAGCGTGGAGCTGTGTTTGGTGTGCG
GGGACCGCGCCTCCGGGCGGCACTACGGAGCCATAAGCTGCGAAGGCTGC
AAGGGATTCTTCAAGCGCTCGATCCGGAAGCAGCTGGGCTACCAGTGTCG
CGGGGCTATGAACTGCGAGGTCACCAAGCACCACAGGAATCGGTGCCAGT
TCTGTCGACTACAGAAGTGCCTGGCCAGCGGCATGCGAACTGTGCAGCAC
GAGAGGAAACCGATTGTGGACAGGAAGGAGGGGATCATCGCTGCTGCCGG
TAGCTCATCCACTTCTGGCGGCGGTAATGGCTCGTCCACCTACCTATCCG
GCAAGTCCGGCTATCAGCAGGGGCGTGGCAAGGGGCACAGTGTAAAGGCC
GAATCCGCGGCCACGCCTCCAGTGCACAGCGCGCCAGCAACGGCCTTCAA
TTTGAATGAGAATATATTCCCGATGGGTTTGAATTTCGCAGACTAACGCA
GACATTGATGTTCGCTACCCAACAGCAGCAGCAACAACAGCAACAGCATC
AACAGAGTGGTAGCTATTCGCCAGATATTCCGAAAGCAGATCCCGAGGAT
GACGAGGACGACTCAATGGACAACAGCAGCACGCTGTGCTTGCAGTTGCT
CGCCAACAGCGCCAGCAACAACAACTCGCAGCACCTGAACTTTAATGCTG
GGGAAGTACCCACCGCTCTGCCTACCACTCGACAATGGGGCTTATTCAGA
GTTCGCTGGACATGCGGGTCATCCACAGGACTGCAGATCCTGCAGCCCAT
CCAAAACCACTGAGCGAAATGTAATCTGATGTGAGCCCGAGTGCGATCAG
AGCGAGGACAGTGCACGAGATGCCGTAACCGGAGCTGGACACATGAACTA
GACTTGAGTGCGGTGAACGAACGTGAGCGATTTGCTATCATGAGGCGTCT
TGAACGATCTCTCCACCGAAGTGCAGTGTGCTCCAGGCCACCGCCGACTG
GTCACTCGAATTAATCGTATATTGTGTGGGACGTCCGAATCATTTTCCAA
CGTCATACCCTGAAGGTACCTGATTTTGG
FMO05322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RA | 2339 | CG7199-RA | 253..1382 | 35..1131 | 4790 | 96.7 | Plus |
| Hr78-RF | 2175 | CG7199-RF | 83..1218 | 35..1131 | 4720 | 96.2 | Plus |
| Hr78-RE | 2182 | CG7199-RE | 90..1225 | 35..1131 | 4720 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21496427..21496743 | 389..73 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 21495177..21495480 | 959..659 | 1390 | 98.7 | Minus |
| 3L | 28110227 | 3L | 21495599..21495868 | 658..390 | 1300 | 99.6 | Minus |
| 3L | 28110227 | 3L | 21496820..21496859 | 74..35 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2509 | 670..839 | 183 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2577 | 670..858 | 164 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2533 | 670..839 | 156 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6900 | 670..833 | 155 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6932 | 670..834 | 155 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2658 | 670..835 | 154 | 61.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6592..6676 | 665..745 | 153 | 69.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8048..8132 | 665..745 | 153 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2484 | 669..832 | 151 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6861 | 670..704 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6841 | 670..716 | 147 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1598 | 670..714 | 144 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2341 | 662..704 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2665 | 671..704 | 143 | 91.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6765 | 670..704 | 139 | 88.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..568 | 670..704 | 139 | 88.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1146 | 670..704 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2982 | 670..835 | 138 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2441 | 670..705 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2825 | 670..705 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6814 | 670..705 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6901 | 669..702 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6757 | 669..705 | 131 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6840 | 670..704 | 130 | 85.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1099 | 663..705 | 130 | 80 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1015 | 669..710 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2850 | 670..714 | 128 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2837 | 670..705 | 126 | 83.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1121..1154 | 670..703 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6887..7036 | 670..824 | 123 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2488 | 670..704 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6819 | 670..704 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1113 | 670..704 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1144 | 671..705 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1158 | 670..704 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6750 | 672..704 | 120 | 84.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1133..1165 | 670..702 | 120 | 84.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3323 | 670..702 | 120 | 84.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2090..2122 | 670..702 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1549 | 663..704 | 119 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6568 | 670..705 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6877 | 670..705 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6883 | 670..705 | 116 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1567 | 670..704 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2404 | 670..704 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7422..7463 | 670..711 | 111 | 73.8 | Plus |
FMO05322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:28 Download gff for
FMO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 248..1382 | 31..1131 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:26 Download gff for
FMO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RB | 206..1346 | 31..1131 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:03 Download gff for
FMO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 248..1382 | 31..1131 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:03 Download gff for
FMO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21495050..21495480 | 659..1072 | 94 | <- | Minus |
| 3L | 21495599..21495868 | 390..658 | 99 | <- | Minus |
| 3L | 21496427..21496741 | 75..389 | 100 | <- | Minus |
| 3L | 21496820..21496864 | 31..74 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:28 Download gff for
FMO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21488150..21488580 | 659..1072 | 94 | <- | Minus |
| arm_3L | 21488699..21488968 | 390..658 | 99 | <- | Minus |
| arm_3L | 21489527..21489841 | 75..389 | 100 | <- | Minus |
| arm_3L | 21489920..21489964 | 31..74 | 97 | | Minus |
