FMO05323.5prime Sequence
1243 bp (1041 high quality bases) assembled on 2008-08-22
> FMO05323.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGGCCCAC
TTCCTCCGCTCAACCAGGAGGCAGCGTTCCAGAAGCTGCAGGAGTACTAC
GACTCCAAGGGCAAGGACCTGAACATCAAGGACCTGTTCGTGAAGGATTC
CAAGAGATTCTCAAAATACAGCCTGCGCCTGCACACCCAGAACGATGGCG
AGATACTGCTGGACTACTCGAAGAACCGTATCAATGACGAGGTCTGGGAT
CTGCTCCTCACCCTGGCCAAGGTGCGCCGCGTTAACGCCGCGCGGGACGC
CATGTTCTCCGGCCAGCACATTAACATCACGGAGAACCGCGCCGTCCTCC
ACACGGCCCTGCGCAACCGCGGCACGGATCCCGTCCTGGTGGACGACAAG
GACGTGATGCCCGATGTGCGCGCCGAACTGGCCCACATGAAGGAGTTCAC
CAACATGGTCATCTCCGGCGTGTGGCGCGGCTGCACCGGCAAACAGATCA
CCGACGTGGTCAACATCGGCATCGGTGGCTCCGATCTGGGCCCGCTGATG
GTCACCGAAGCGCTGAAGCCCTACGGCAAGGGCCTTCACTCCCACTTTGT
GTCGAACATCGATGGCACTCATCTGGCCGAGGTCCTCAAGAAGGTCAACT
ACGAGACCACCCTCTTCATTGTCGCCTCAAAAACTTTCACCACCCAGGAG
ACCATTACGAACGCCACCTCCGCCAAGACCTGGCTCCTGGAGCATTCCAA
GGAGCCTGAGTCCGTGGCCAAGCATTTTGTGGCCCTGTCGACCAACAAGG
AAAAGGTCACCGAATTCGGCATTGACAGCACCAACATGTTCGGTTTTTGG
GATTGGGTGGGCGGTCGCTACTCCCTGTGGTCGGCCATTGACTGTCAATC
TGTCTGTCCATTGCTTTGAAACTTTGAGCACTGCTGATGGAGCTCACTTC
ATGGACTACCATTTCAGACGACACCATTCGAGAAGAATGCTTCTGTATCC
TGCGTTGCTAGGCGTTTGGTACTCCAACTTCTTCAAGCGAAACACATGTC
CTCTTCCCTACGAATCAGTACTTGCACCGGTTGCCGGCTAACTTCAACAG
GACGAATAGAAACACGCAAAGTTCGTCAGCCAGTCGGCAATCCGTCAGAT
ACGCACTGTTCGATCTGTGTGGCGACTGACCATGCTAAGGCTCTACGATT
ATCACAGGAACCGCCTGTAATCCCTGCAATATTATGTTCTGAT
FMO05323.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 2277 | CG8251-RC | 321..1477 | 38..1175 | 4980 | 96.6 | Plus |
| Pgi-RB | 2321 | CG8251-RB | 365..1521 | 38..1175 | 4980 | 96.6 | Plus |
| Pgi-RA | 2460 | CG8251-RA | 504..1660 | 38..1175 | 4980 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8912605..8913190 | 754..169 | 2930 | 100 | Minus |
| 2R | 25286936 | 2R | 8912016..8912258 | 989..753 | 900 | 97.1 | Minus |
| 2R | 25286936 | 2R | 8913433..8913566 | 171..38 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 8911857..8911939 | 1082..1002 | 225 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:50 has no hits.
FMO05323.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:36 Download gff for
FMO05323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 498..1634 | 31..1152 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:27 Download gff for
FMO05323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RC | 418..1548 | 38..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:59 Download gff for
FMO05323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 498..1634 | 31..1152 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:59 Download gff for
FMO05323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8913433..8913566 | 38..171 | 100 | <- | Minus |
| 2R | 8912017..8912256 | 755..988 | 97 | <- | Minus |
| 2R | 8912605..8913187 | 172..754 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:36 Download gff for
FMO05323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4799522..4799761 | 755..988 | 97 | <- | Minus |
| arm_2R | 4800110..4800692 | 172..754 | 100 | <- | Minus |
| arm_2R | 4800938..4801071 | 38..171 | 100 | <- | Minus |
