FMO05325.5prime Sequence
1197 bp (1021 high quality bases) assembled on 2008-08-22
> FMO05325.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGTGGAT
TATGTACTGGAGGACCTGATGGGGAAACTTGGGGAGTTTGGAAAGTACCA
GTTCCTGCAGTTCTTCCTGCAGGTGCTCTCCGGCCTGACCGCTGGCATGC
ACATGCTATCGCTGGTCACGGTGGCCGCCGTGCCTGAGCATCGCTGCTTC
ATCGAGGGCGTGGATAACAGCAGCTTGTCGGTGACACCATGGAACTCGAG
CGCTATCCTGGCCGCCATTCCGCTGAAGCCCAATGGCGAGCTAGAGTCCT
GCCTCATGTTCGATCCCAGTAGTCCTGGCACCAATACCACCATCAATTGC
GAACGTTACGTATACGACACGACGTACTACAAGACTTCGCGCACCATCGA
CTGGAACTTTGTGTGCGATCGCCGCTGGATGGGAGCCATTGTGCAGACCG
TGTTCATGCTGGGCGTGTTCACAGGCGCAGTCACCCTTGGCGGACTCGCC
GACAAAGTGGGTCGGAAAACCGTGTTCTGCTGGTCGGCCCTGTTCCAATT
GATCATCGGTGTGGGTGTGGCCTTCATTCCCGAGTACTTCTCATTCATGG
TGGCTCGCTACCTGCTGGGCATTGTGGGATCAGCGGGTGCCTACATCTGT
GGGTTCGTGCTGACCATGGAACTGGTGGGACCTACCAAGCGTACTGTGTG
CGGCATTACCTTCCAGGCTGTTTTCGCTGGTGGCATCATGTTGGTGGCCG
GATGGGGAGCACTCATCCCTGACCGCCAGTGGCTCCAAGTGATCTACGGA
CTGCATGGCTGTCTGTTCCTGGGCCACTGGTGGTGGCTCGATGAATCTCC
GCGCTGGCTGTGGATGCAGGGACGTGCCGCCGAGGCGGTGGATATTGTGC
CAAGGCCTGAGAATCACGGATCGGGCATCCCGGTGGACAAGGAGTACTAT
GTGCAGAAGTCAACAGCAGCGCGACGAGAAAATCAGCGCGATGAGCGACT
CTTCGCACGCCAACTGAGATGAGACTTTGACGTGTGCTCTGCTGTTCGCA
ATTCTCTGTATACGACTATCGCTCATGCGCAGCTGATGCATTCTACTGAT
CTGTTCATCATGGCCTGGATCCCAGCTCCATACCTTGTCGCTTATGCCTG
GATCGCTCGATACTCACCTGATTGAGTGTCGACTAGTCTCGCCATCT
FMO05325.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6126-RA | 2126 | CG6126-RA | 249..1316 | 37..1075 | 4615 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16199259..16199895 | 717..81 | 3185 | 100 | Minus |
| 3R | 32079331 | 3R | 16198953..16199199 | 958..715 | 1090 | 98 | Minus |
| 3R | 32079331 | 3R | 16202785..16202835 | 87..37 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:59 has no hits.
FMO05325.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:42 Download gff for
FMO05325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 241..1189 | 29..976 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:49 Download gff for
FMO05325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 241..1189 | 29..976 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:33 Download gff for
FMO05325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 244..1192 | 29..976 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:33 Download gff for
FMO05325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16198934..16199197 | 717..976 | 96 | <- | Minus |
| 3R | 16199260..16199894 | 82..716 | 100 | <- | Minus |
| 3R | 16202791..16202840 | 29..81 | 92 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:42 Download gff for
FMO05325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12024656..12024919 | 717..976 | 96 | <- | Minus |
| arm_3R | 12024982..12025616 | 82..716 | 100 | <- | Minus |
| arm_3R | 12028513..12028562 | 29..81 | 92 | -> | Minus |
