FMO05326.5prime Sequence
1246 bp (1034 high quality bases) assembled on 2008-08-22
> FMO05326.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGGAATCATG
CGTGTGCCATCGATTTTGGCCAAAAATGCAGTCGCCTCCATGCAACGTGC
CGCAGCCGTTGGAGTGCAGCGCAGTTACCACATCACACACGGCCGCCAGC
AGGCCTCGGCGGCGAATCCGGACAAGATATCGAAGCAGTACCCGGTGGTG
GATCACGCCTACGATGCGATCGTCGTGGGAGCAGGAGGAGCCGGCTTGCG
GGCGGCTTTTGGCCTGGTGGCTGAGGGATTTCGCACGGCGGTGATCACCA
AGCTTTTCCCCACCCGCTCGCACACGATCGCCGCCCAGGGCGGTATCAAT
GCCGCTCTCGGCAACATGGAGGAGGACGACTGGAAGTGGCACATGTACGA
CACGGTCAAGGGCTCCGATTGGCTGGGCGACCAGGATGCCATCCACTACA
TGACCCGCGAGGCGCCCAAGGCTGTCATTGAGCTGGAGAACTACGGCATG
CCCTTCTCGCGTACCCAGGACGGTAAGATCTACCAGCGCGCCTTCGGTGG
ACAGAGTCTGAAGTTCGGCAAGGGCGGACAGGCCCATCGCTGCTGTGCTG
TGGCTGATCGTACTGGTCACTCGCTGCTGCACACGCTATACGGTCAATCG
CTGAGCTACGACTGCAACTACTTTGTGGAGTACTTTGCCCTGGATCTGAT
CTTCGAGGACGGCGAGTGCCGTGGTGTGCTGGCCCTGAACCTGGAGGATG
GCACACTGCACCGATTCCGCGCTAAGAACACGGTCATTGCCACCGGTGGA
TATGGACGAGCATTCTTCTCCTGCACCTCGGCGCACACATGTACCGGTGA
CGGTACTGCTATGGTTGCACGCCAGGGACTGCCCTCTCAGATCTGGAGTT
CGTGCAGTTCCATCCTACTGGCATCTACGGCGCCGGATGTTTTCATCACC
GAGGGCTGCGCGGTGAGGTGGTTACCTGATCACGGTAATGTGAGCGCTCA
TGAGCGCTATGCCTCCTGGTGGCCAAGGATCTGGCTCTCGCGACGTCGTC
TCGCGGTCGATGACATCGAAATCATGAAGGTCGTGGCGCTGGACCCGAAA
AGGATCCGTTGTACTGCACTTGCACCACTTGCGCTCAAGCCACTCCGGGA
AGGCTGGCTGCACTCAAAACGCCATGTCCTCGAGTGAGTAACCTGGTGAG
AACCTCCAGTGTCCACCGTATAACATGGCGGGTGCTAATCATAATC
FMO05326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhA-RA | 2750 | CG17246-RA | 227..1342 | 34..1140 | 5070 | 97.9 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 140..1255 | 34..1140 | 5070 | 97.9 | Plus |
| SdhA-RB | 2617 | CG17246-RB | 94..1209 | 34..1140 | 5070 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19393396..19394444 | 1132..92 | 4425 | 97.8 | Minus |
| 3L | 28110227 | 3L | 11924225..11924551 | 538..212 | 450 | 75.8 | Minus |
| 2R | 25286936 | 2R | 19395687..19395745 | 92..34 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:28 has no hits.
FMO05326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:19 Download gff for
FMO05326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 87..1218 | 28..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:50 Download gff for
FMO05326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scs-fp-RA | 185..1316 | 28..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:34 Download gff for
FMO05326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 87..1218 | 28..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:34 Download gff for
FMO05326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19393378..19394443 | 93..1148 | 97 | <- | Minus |
| 2R | 19395687..19395752 | 28..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:19 Download gff for
FMO05326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15280883..15281948 | 93..1148 | 97 | <- | Minus |
| arm_2R | 15283192..15283257 | 28..92 | 95 | | Minus |
