FMO05327.5prime Sequence
1218 bp (996 high quality bases) assembled on 2008-08-22
> FMO05327.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGGTCGATAT
ATGCAGTCAACCGCACAATTTGCTCAGTTCAATGAGTGGAACAACAGATA
CCTCGTTGTCGCTGAACTCATTGTCCCTGACTTCCGTTCTGCCGCCAACG
GATCCCGATCACCATAATCCACACAGTACACACAGTACGCACAACATGAA
CAAGCTGTGCCGCCAAGTGTCAATTGAGTCGCCCGGTCCGGGCGCCAAGA
ACTGCGTCTTCAACTTCTTCGTGCCCATCGAGGACACGCCGGCGTTGGGC
GCCCGCATCCGGATCGTTTGCGCCGGAGCCTGCTATCGTCGTCGCGATCG
CGCCAACTCCATCACCAGCATGTCCTCAGTGTCCTCGGAGCTGAGCGACT
ACTGTCCGTCGGTGAACTCGATGTCCTCGCCCGCACACCAGGGCATCCGG
GAGGGCTCCTTCTTTCCCGGCTTCGAGGTGGCCGGCGTCATCGAGTCCCT
GGGCTCGGAGATCACCGAGGCCAACAACCGTGGCCTGCGCATTGGACAGC
GCGTGATCGTCTATCCGTTCGATGAGACCCCAGCCGGCTATGCCGAGCTG
CTGGTCGTGCCGGACCTGAAGCACGTGGTGCCCATTCCCGACAGTCTGCC
CATGGAGGTGGCCGCCATGCTGCCGACGGGCGCCCTGCTCGCCTGGAATG
CCGTCTTTCAAGGCTCAGGCCGTTGTCACACAGATTCTCAGCCAGCGGGC
TGCCACGGAGCCGAAAGCGGAAGCCCAAGATCCTCATCGTGGGCACTGGC
GGCCTGGCACTCTGGGCCGTGCGCATCGCCTCCTATCACTTTGCCACAAC
TGGAGCCGACAACGTGGACATCACAAGTGGCCAGTCTGCGGGACGAGGGC
TTCCGCCTGGCCACAGAAATCAAAATGTCAGCGTGTTCATGAACGAATGC
CTGTACGAGCCGCAGCTGATCGAGCGCACAGACGTGTGCGCGAGCCGTGA
CGTGTCATGACTTTGCACACCTCAGAGTCTGCACCGCTCGATGCACTGCT
GTCAAGCGCGTTGTGCTGAATCACGACAGTGCGAACTGCTGCCCAAGTTC
TCGGCTGTCGACGTACGCAGATTTCGCCATTGACGGACCGCAACCCTGCT
GACTGTGAACTGTACAAGAATTAGGCTCGACTCGCTTTCCTGTGAACGGC
CGGATCTGCACACTTCAT
FMO05327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drat-RC | 1938 | CG1600-RC | 214..1305 | 37..1103 | 4680 | 96.9 | Plus |
| Drat-RA | 2021 | CG1600-RA | 228..1271 | 85..1103 | 4440 | 96.8 | Plus |
| Drat-RD | 2102 | CG1600-RD | 311..1352 | 87..1103 | 4430 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7527134..7527978 | 932..85 | 4060 | 99.4 | Minus |
| 2R | 25286936 | 2R | 7529028..7529077 | 86..37 | 250 | 100 | Minus |
| 2R | 25286936 | 2R | 7527016..7527054 | 979..941 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:49 has no hits.
FMO05327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:26 Download gff for
FMO05327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drat-RC | 207..1323 | 29..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:52 Download gff for
FMO05327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1600-RC | 202..1318 | 29..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:43 Download gff for
FMO05327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drat-RC | 207..1323 | 29..1116 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:43 Download gff for
FMO05327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7527140..7527976 | 87..925 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:26 Download gff for
FMO05327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3414645..3415481 | 87..925 | 99 | <- | Minus |
