FMO05328.5prime Sequence
1230 bp (1028 high quality bases) assembled on 2008-08-22
> FMO05328.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGGCGACAG
CTCAGCGGAGTCGCACGAACAGGAAGCAGCCTAAGCCTCTGCAGAATGCG
AGGATTCTCGGCACTGGTGCAGGATAAGGCCCTGGTGGATGGCGCCTGGG
TGGATTCCAGCAATGCAAAGGCGACCTTCGAGGTGCGGAATCCTGCCAAT
GGTGCTGTCATCGGCAAAGTGCCCAACATGACGGTGGCGGATGCCCAGAA
GGCCATAGACGCCGCTAAGCAGGCGTACGAGTCCAAGGAGTGGCGATCCC
TGACCGCCAAGGATCGGTCCAACCTGCTCAAGAAGTGGCACAAACTGATC
GAGCAGCACTCGCAGGAGATAGCCGAGATAATGACGGCCGAGTCGGGCAA
GCCGATCAACGAGTCGAAGGGGGAGGTGGCCTACGGAAACGCCTTCGTCG
AGTGGTTTGCAGAGGAGGCCCGTCGCATCTACGGCGAAATTGTGCCCAGT
GCATCGCCCAATCGCGAAATCATAGTAATGAAGCAGCCCATTGGGGTGGC
GGCGCTGATTACGCCCTGGAACTTCCCGATGGCTATGATTACGAGGAAAG
CAGGAGCCGCCCTGGCCGCAGGATGTACGGTCGTGGTGAAACCTTCAGAA
GACACTCCTCTTACTGCCCTGGCTGTGGCCAAATTGGCAGTGGACGCTGG
CATTCCAAAGGGTGTGATAGATGTGGTCACCACAAACAAAGCGGCTCCCA
TTGGCGATCTCTTCTGCAAGAGTCCCGATGTTAGGGGTATATCCTTCACG
GGCTCCACTGAGTGGGCAAACTGCTGTTCCGGAACTCTGCTGATGGCATC
AAAGGATTTGTCTCGAGCTCGGCGGCAATGCTCCGTTCATTGTCTTCGAT
TCGGCGGACATTGAAAAAGCAGTGGATGGCGCCATGGCCTCGAAGTTTAG
AATGCGGACAGACCTGCGTCTCGCAATAGATTCTTGTCAGGACAGCGTCT
ACGATAGTTTGTGGGCAGCTGAAAAACGCGTGCAGCTTGAGATCGAGATT
GTCATGGTTTGCATGTGCAATCGGACACTGATCACGGAAATGCAATTCAC
AAGTCATGCCTTGTGTAGACGCCAGGTCGAAATGGCAACTATTCGGCCGC
AGCCGTTTCCCGAAGGAATCTTCACCCCAAATTGCGAATGGCACCTGGCA
CTTATCGGAGAGCCTTGTCCTCGGCTTCAT
FMO05328.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1847 | CG4685-RE | 191..1305 | 39..1131 | 4830 | 97 | Plus |
| Ssadh-RD | 1865 | CG4685-RD | 209..1323 | 39..1131 | 4830 | 97 | Plus |
| Ssadh-RC | 1858 | CG4685-RC | 202..1316 | 39..1131 | 4830 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25625464..25626169 | 1026..331 | 3060 | 97.9 | Minus |
| 3R | 32079331 | 3R | 25626344..25626637 | 332..39 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:54:19 has no hits.
FMO05328.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:42 Download gff for
FMO05328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 200..1227 | 36..1049 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:53 Download gff for
FMO05328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-RC | 172..1199 | 36..1049 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:53 Download gff for
FMO05328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 200..1227 | 36..1049 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:53 Download gff for
FMO05328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25625436..25626167 | 333..1049 | 97 | <- | Minus |
| 3R | 25626344..25626645 | 31..332 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:42 Download gff for
FMO05328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21451158..21451889 | 333..1049 | 97 | <- | Minus |
| arm_3R | 21452066..21452367 | 31..332 | 98 | <- | Minus |
