FMO05329.5prime Sequence
1222 bp (992 high quality bases) assembled on 2008-08-22
> FMO05329.5prime
TAGCATACCTTATACGAAGTTATCAGTCGACATGGCAACCAGCACCTCAC
CCGGACCCACAAGGACAACTGCAGCCATTAGAGTCTCCCTGCCAGGAGCA
GCACCCGCAATTCCCGCTACCGCCACCGCCGGCTCTCAATCCCCCGGCGC
CATCATGCCCATGGCCGCCGTGCCGTTGCCGTCGCATCTCCAACTGCTGG
GCAGTTCCGCGGGAGGCGTCGGTCAGCCGGCGGCAATCACGCCCGTTTCG
CCCACGGCTGCTACCACAGTTCTCGCCCAACCGCACAGTTTGAGCCCCTC
CACGCCCATCCTCACCCAAGGAGCACCCCCTGCTGCGGCGTTGGGCGGCA
TCTTCTGCGGAGGCAGTGCAGCAGCGGGACCAGGAGCAGCAGCGGCGGCG
GCCACGAATCTCAACGCCCTGGCCTCGCAGCATCGACTACTGGAGTTGTC
CCGCTTCGGACTGCGTGGATATGATCTGGCGCAGCATATGCTATCCCAAC
AAGGAGCCGTATCCAAGTTGCTGGGCACCCTGCGACCACCTGGCCTAATT
GGCGGCTCCAAGCCGAAGGTGGCCACCCCGACTGTCGTCTCCAAGATCGA
GCAGTACAAGCGCGAGAATCCGACGATCTTTGCATGGGAAATCCGCGAGC
GACTGATCACCCAAGGTGTCTGCACCAATGCCACTGCTCCTTCGGTGAGC
AGCATCAATCGCATATTGCGTAATCGAGCGGCGGAAAGGGCAGCTGCGGA
ATTTGCTCGGGCGGCGAGTTACAGCTATGCCATCCATCCCACACATCCGC
ATCCGTACACCAGTTTCCCCACTTGGCCGGCGCATCATCGGCTGTGGGGA
GCCGTGCCCTGGCCACGCCACCTGTGGCGGCCCTGCTGGAGCCCGTGTGC
CACTGCAGCCGGGCGGCAGTGCAGCAGCTATGGCAGTGATGGCACATGAG
CTCAATCCCATAGCAGCACAGCACACCACCCCACAGCAATGCCCACATAC
CACAGCGCAGTGATGCGGGATAGTAGTTGCGGAGTGACGCCTCTCCTGCC
GCACTTCGCCGGATCCGAGTAGGACAGCCGCTTCCCGACGCAATGCCATC
GAAGATGATATCAGGCAAGAAAGCGATCCAGAATGACCACCGAGTCGGCC
CATCCACCCTTATCCGGAACTGTAACTGAAAGATGCACATGTCAATATCT
GCGATATTCCCGAACTGTGCCC
FMO05329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toe-RB | 2383 | CG10704-RB | 355..1445 | 31..1098 | 4680 | 96.8 | Plus |
| toe-RA | 2400 | CG10704-RA | 355..1445 | 31..1098 | 4680 | 96.8 | Plus |
| eyg-RC | 3148 | CG10488-RC | 758..1062 | 428..729 | 765 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12427557..12427814 | 525..268 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 12423875..12424174 | 955..660 | 1210 | 96.7 | Minus |
| 3L | 28110227 | 3L | 12432076..12432314 | 269..31 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 12425381..12425524 | 667..524 | 705 | 99.3 | Minus |
| 3L | 28110227 | 3L | 12465031..12465158 | 657..530 | 400 | 87.5 | Minus |
| 3L | 28110227 | 3L | 12464834..12464899 | 729..664 | 240 | 90.9 | Minus |
Blast to na_te.dros performed 2014-11-28 23:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 41..119 | 1006..929 | 131 | 64.6 | Minus |
| Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 36..134 | 997..901 | 120 | 63.4 | Minus |
FMO05329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:22 Download gff for
FMO05329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toe-RA | 351..1409 | 26..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:55 Download gff for
FMO05329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toe-RA | 351..1409 | 26..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:41 Download gff for
FMO05329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toe-RA | 351..1409 | 26..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:41 Download gff for
FMO05329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12427558..12427812 | 270..524 | 100 | <- | Minus |
| 3L | 12432076..12432318 | 26..269 | 99 | | Minus |
| 3L | 12423749..12424168 | 666..1067 | 93 | <- | Minus |
| 3L | 12425383..12425523 | 525..665 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:22 Download gff for
FMO05329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12416849..12417268 | 666..1067 | 93 | <- | Minus |
| arm_3L | 12418483..12418623 | 525..665 | 99 | <- | Minus |
| arm_3L | 12420658..12420912 | 270..524 | 100 | <- | Minus |
| arm_3L | 12425176..12425418 | 26..269 | 99 | | Minus |
