FMO05330.5prime Sequence
1240 bp (1068 high quality bases) assembled on 2008-08-22
> FMO05330.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGCAAAAGA
CAAACGGACATAGCGCCAACGGATGCAACGGCAGCAATGGCAACTCATAT
GACATGGAAGACGGAGCTACATTCCTGTTCACTTCCGAGTCCGTTGGCGA
GGGTCATCCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATG
CCCATCTGAAGCAGGATCCAAACGCGAAGGTGGCGTGTGAAACCGTCGCC
AAGACGGGCATGATTCTGCTGTGCGGCGAGATCACGTCTAAGGCTGTGGT
CGACTACCAGAAGGTTGTTCGTGAGACAGTGCAGCACATTGGTTATGATG
ACTCCTCCAAGGGTTTCGATTTCAAAACGTGCAATGTGCTGTTGGCATTG
GACCAACAATCGCCTGAGATCGCTGCGGGAGTGCATGTCAACCGTGCCGA
GGAAGAGATCGGTGCCGGAGATCAGGGTATCATGTTTGGATATGCCACCG
ACGAAACCGAGGAATGTATGCCCCTAACCGTCGTTTTGGCTCACAAACTA
AACGAAAAGATTGCTGAGCTGCGTCGCTCAGATGTGTTCTGGTGGGCTCG
CCCCGATTCCAAAACACAAGTAACCTGCGAGTACCTCTTCAATCAGGGAT
CAGCAGTTCCCAAGCGTGTCCACACTATTGTAGTGTCCATGCAGCATTCT
GAAAAGATATCGTTAGAAACCCTGCGCTCGGAAGTAATGGAGAAAGTTGT
TAAAGTAGTCATTCCCGCCAAATACATTGATGCCAACACCATTGTCCACA
TCAATCCTTGTGGGCTTTTTGTAATCGGTGGACCAATGGGTGACGCTGGG
CTTACAGGAAGAAAAATCATTGTAGATACTTACGGAGCTGGGGCGCCCAC
GGCGGCGGTGCATCTCTGGCAAGGACTTCACAAGGTTGACAGATCAGCTG
CATATGCAGCACGCTGGGTGCCAAATCACTGGTAAGCCGTCTCTGCAGCG
CTGCTTGTCCAGTGTCCTACGCCATAGGTCTTGCTGAGCTCTTCTCATAC
TGTGTTCGACTACGAACTTCCCCAGTCCAAGACTTCTGATATATCCGTCG
AAACTTGACCTCAGCCGGCAGATGTCAGACTTAACTGCGCCAGCGATTAC
AGGAACAAGACCTATGACCTTCGGGCGCGTCCTGGGAGATCAGCTGAAAT
GAACCAGCTTCAACAATCTTGTGGCGCGGGCCAATATGGG
FMO05330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sam-S-RE | 2387 | CG2674-RE | 269..1450 | 36..1179 | 4905 | 96.3 | Plus |
| Sam-S-RA | 2293 | CG2674-RA | 175..1356 | 36..1179 | 4905 | 96.3 | Plus |
| Sam-S-RI | 2429 | CG2674-RI | 311..1492 | 36..1179 | 4905 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 112687..113263 | 473..1039 | 2410 | 97.7 | Plus |
| 2L | 23513712 | 2L | 108684..108809 | 36..161 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 110754..110879 | 239..364 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 111906..112020 | 362..476 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 110404..110483 | 160..239 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:52 has no hits.
FMO05330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:18 Download gff for
FMO05330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RI | 306..1429 | 30..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:56 Download gff for
FMO05330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M(2)21AB-RD | 268..1391 | 30..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:53 Download gff for
FMO05330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RI | 306..1429 | 30..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:53 Download gff for
FMO05330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 110755..110877 | 240..362 | 100 | -> | Plus |
| 2L | 111907..112019 | 363..475 | 100 | -> | Plus |
| 2L | 108679..108809 | 30..161 | 98 | -> | Plus |
| 2L | 110406..110483 | 162..239 | 100 | -> | Plus |
| 2L | 112690..113368 | 476..1127 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:18 Download gff for
FMO05330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 110755..110877 | 240..362 | 100 | -> | Plus |
| arm_2L | 111907..112019 | 363..475 | 100 | -> | Plus |
| arm_2L | 108679..108809 | 30..161 | 98 | -> | Plus |
| arm_2L | 110406..110483 | 162..239 | 100 | -> | Plus |
| arm_2L | 112690..113368 | 476..1127 | 95 | | Plus |
