FMO05332.5prime Sequence
1246 bp (1057 high quality bases) assembled on 2008-08-22
> FMO05332.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGATCAACGGCCTGA
GCGTTGGCGGTGGTCAGCAGGTGGCGCAGGTGACGCCAACAGGTGCTGCA
ATTAAATTGCACTTTGCCTACAACAACAACAGCAACAACAGTAGCAGCAG
CAACATCAGCAACAGCAACTACAGTGGCCTTAAAACATCGGAGACGAAAA
TGAGGAACAACAAGAACTACACAGGCAGAGCGCTGAAAATAGTTGAGAAG
ATACCGGGAGCAAGTGGAGTAATCGCCACAACGAGCGGCAACCAAGGAGC
AAGAAGCCTTGAGGGATATTCTCCGGCAGCGGCATCTTACGTTTCGGGCT
TGTCCAGGGACTTTTTGATATCCAGAGAACTTTCCCAAAGATCAGGAGAA
TTCCTGACAGCTGCTGCAAAGATGGTATCCCAAATGGGAGCAAGCGAACT
CCGCTGGCTCCCCATATCCAGGACCAAAGACAAACCATCGAGCGCAGGAG
AAGCAGAAGCTAAAACATTAGTCAGAGAAGGTGAATCACAAGGATCGCCT
GGTAAAGTTGCCAAAAGTGCCTTAGGTGACCCCCAGCCGCAGCGCACCGA
AGACCAAGAAAATGCCTTTCGGCGCATCGAGGATGTGCACAACTATGCCA
AGTTGCAGGACTGCAGCAGCGACACTGACGACGAGGACGACGAAGAGGAA
GATCTCGATGAAGAGGAGGATGATGAGGAGGAGGCGGAGATCCAAGTGCA
GTTGCCTGTGCAGCAGGAGGTCACGCGCATTCGTCGCGAGGCCGCCGAAG
AGCATGTGGACGTGGACGTGGTCACAGTGCCGCAGCAGGAGCAGGATCAG
TATAGCCATCAAGTAGAGCCGCGACAGCTTCAGCAGGATGAGACAGCGGA
TAACACACGGCCGGAGCATCATGCCCGGCGACCCATGAATGCCTTCTTCA
TATTCTGCAAGAGACATCGCGGTATCGTCAAGGAGCGTTACAACTTTGGA
GAACCGTGCATTACAAAGATACTTGGCGACTGTGGGCCGCTCTCGACGAG
CAGGAAAAACCCTGCTTCACGGATCTGGCACAGCAGAACAGACGCTCTCA
ATGCTAATCAACTCAGATGGTACAAACTGCAGCTCGCGCGTGCAACGCCT
TAGCTTACCGATTCAAAGGCACAACGGGTTGCTGCTGCTACAATGAGAAT
ACGCAAACGAACGGGTGCCGACATCACTGCAAGAGTCAGTGGGCAG
FMO05332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbx-RE | 3616 | CG1414-RE | 396..1511 | 33..1135 | 5205 | 98.3 | Plus |
| bbx-RD | 3334 | CG1414-RD | 114..1229 | 33..1135 | 5205 | 98.3 | Plus |
| bbx-RC | 3363 | CG1414-RC | 143..1258 | 33..1135 | 5205 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21369747..21370722 | 33..1006 | 4785 | 99.6 | Plus |
| X | 23542271 | X | 21370796..21370874 | 1009..1086 | 315 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:01:04 has no hits.
FMO05332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:33 Download gff for
FMO05332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 143..1255 | 28..1130 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:59 Download gff for
FMO05332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 143..1255 | 28..1130 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:51 Download gff for
FMO05332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 140..1252 | 28..1130 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:51 Download gff for
FMO05332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21370793..21370874 | 1007..1086 | 95 | -> | Plus |
| X | 21369744..21370722 | 28..1006 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:33 Download gff for
FMO05332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21240771..21241749 | 28..1006 | 99 | -> | Plus |
| arm_X | 21241820..21241901 | 1007..1086 | 95 | -> | Plus |
