FMO05333.5prime Sequence
1233 bp (1065 high quality bases) assembled on 2008-08-22
> FMO05333.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCCTCGACTT
CGACGCAGTGGAATACTGCAAAGGGGTGAAGACCCAGCAGTCCCAGCCGC
CTTTCGCCTGTCCCGTCCGCGGCTGCGACCGCAGCTACAAGACCATCATG
GGTCTGCAATACCATCTTATGAAGTACGACCACGACAACCCACAGCCGCT
CACGCCCGTGCTGACTCCGAGCCGCAAGAAGGCGCGCTCACGCTCCGGCG
GCCACCACTCCACGCCTCGTCCGCACAAGGATCACCCCACGCCGGGTGGC
GGTGGAGCTGAGGCCAGAAACGGCTGCTCCTCGGCCAGCGCAGGAGGTGG
ATCGGCGAGCGGAGTCAGCGCCCGGCAGTACGCCAATCCAGAGTCACTGG
TGTCCTACAACGAGGAGGAGGCCACGGTGACGTTTAACTTGGACGGGAAG
AGCGTGCGCCTGGGCATCGACGACGCCTTGCCGCTCGTAGAGGACGAAGA
GTTCGCCGCCCTAGTGGCCAGGGGCTGTATTCTGAATGCCGACGCACCAC
CGCTGGAGGAGAACGCGCCCTGGGCAAGGGTCCAGGTGCCCGTGGCCAGG
GTGGCCGAGATTCCGGACTACCGAGTGTCCGACGCCCCGCCACGGCCGCT
GGCCTACTATCGCTTCATCGAAAAGTCCCTGGAGGAGCTGGACGGGGAGG
TGGAGTACGACGTTGACGAGGAGGACTCCGCCTGGCTGGAGCACATGAAC
GAGGAGCGCCAGCGACTCGGCCTGAACGCCGTGGGCATCGACACGATGGA
GCTGCTGATGGACCGGCTGGAGAAGGAGTCGCACTTCCAGGCGGCGGCCA
ACGGCACACCCACAGGCGTCGAGGTGGACGACGACGCAGTCTGCTGCATT
TGCCTCGACGCGAGTGCCAAACACCAACGTGATACTTTTCTGCGACATGT
GCAACCTGCGGTACACCAGGACTGCTACGTGTCCCTATATCCCGGAGGCC
AGTGCTGTGCCGCCGATGCTGCAGTCACCCAGTAGCTGTGAACTGTGTGC
TTTGTCCCATGGCGGCGGGCAATCAGCCGACGGACACGGGCAGTGGGCGC
CCCGTGGTGTGGCGCTGATACGGAGTGCGGTCGCCACCGTCTTCTGGACA
TAATCATGAAACATTCCGTCGTGCACTCCTGCTACGTGCAAGAAAGGCTG
GAACTGCATCCAGGTGCATCTGAAAGAACTCCT
FMO05333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Br140-RB | 5509 | CG1845-RB | 219..1313 | 36..1116 | 4990 | 98 | Plus |
| Br140-RA | 5251 | CG1845-RA | 219..1313 | 36..1116 | 4990 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7276850..7277883 | 1059..36 | 4675 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:49 has no hits.
FMO05333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:43 Download gff for
FMO05333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Br140-RA | 208..1313 | 29..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:00 Download gff for
FMO05333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1845-RA | 182..1287 | 29..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:56 Download gff for
FMO05333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Br140-RA | 208..1313 | 29..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:56 Download gff for
FMO05333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7276789..7277888 | 29..1116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:43 Download gff for
FMO05333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3164294..3165393 | 29..1116 | 97 | | Minus |
