FMO05334.5prime Sequence
1245 bp (1071 high quality bases) assembled on 2008-08-22
> FMO05334.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAACGCAAC
CTGAGGTGCCCGAGGTGCCGCTGCGACCGTTTAAATTGGCGCATCAGGTT
GTGAGCCTCACGGGCATCAGTTTCGAGCGGAGGAGCATAATCGGCGTGGT
CGAGCTGACCATTGTGCCGAACAGCGAGAATCTGCGCCTGATACGCCTGA
ATGCCAAGCAGCTGAGAATCTACAGCGTCGTTTTGAACGATGTCTGCCAG
GCGGATTTCACGTACTTCGATCCCTTCCAGAACATCTGCTACAAGGAGCA
CAAGAGCCGCGCGCTGGAGGTCTACTCCAAGCATCATCTGACCGCCGCCC
AGTACACCGATCCCGATGTGAACAACGGCGAACTGCTCATCCAGGTTCCG
CCCGAGGGCTACTCTATGATCCAGGAGGGTCAGGGTCTGCGCATCCGCAT
CGAGTTCTCGTTGGAGAATCCCAAATGCGGCGTACATTTTGTCATACCAC
CCGCTTCAACGGACGAGGAGACACAGATGAACAGCTCGCATATGTTCACC
AATTGCTATGAAAACTCGTCGAGATTGTGGTTTCCCTGCGTGGACAGTTT
CGCCGATCCCTGCACCTGGCGGCTGGAGTTCACTGTCGACAAAAATATGA
CCGCCGTTTCGTGTGGAGAACTTCTAGAAGTCATTATGACCCCAGATCTG
CGAAAGAAAACCTTCCACTATTCGGTTAGCACACCAGTATGTGCACCAAA
TATTGCGCTGGCTGTGGGTCAGTTTGAGATCTACGTGGATCCGCACATGC
ATGAAGTGACCCACTTTTGTCTGCCCGGATTGTTGCCGCTGTTAAAAAAT
ACGGTTCGCTATTTGCACGAGGCATTTGAATTTTACGAGGAGACCTTATC
TACGCGCTACCCATTCAGTTGCTACAAACAAGTGTTTGTAGACGAATTGG
ACACGGACATAAGTGCCTATGCCACTATGAGCATTGCTTCGGTGATCTGC
TGCACTCCATAGCTATCATCGATCAGACCTATATATCTCCGAACTTATGT
CGCGCCGCTGTGCCTGAGCAATTCCTTCGCTGCTTATACATCCCATCATG
ACCGACACCTGGCTGCAGGCATTGCGAATACCTGTGTGAATGGTATTCAG
GATGCCTCCGCACCAACGATACCGGGCTTGGTGCATCTGACTGGGCGGTG
TCTTACGCTACAGAGAACAATAGTGGCGCCTAAATACCGAATGCA
FMO05334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf2-RB | 3858 | CG6711-RB | 115..1305 | 38..1211 | 5220 | 96.9 | Plus |
| Taf2-RA | 3972 | CG6711-RA | 115..1305 | 38..1211 | 5220 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9887396..9888339 | 1085..143 | 4470 | 98.9 | Minus |
| 3L | 28110227 | 3L | 9888401..9888456 | 143..88 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 9888520..9888569 | 87..38 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:53 has no hits.
FMO05334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:27 Download gff for
FMO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf2-RA | 107..1212 | 26..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:44 Download gff for
FMO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf2-RA | 105..1210 | 26..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:44 Download gff for
FMO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf2-RA | 107..1212 | 26..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:44 Download gff for
FMO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9887347..9888339 | 143..1126 | 98 | <- | Minus |
| 3L | 9888402..9888456 | 88..142 | 100 | -> | Minus |
| 3L | 9888520..9888577 | 26..87 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:27 Download gff for
FMO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9880447..9881439 | 143..1126 | 98 | <- | Minus |
| arm_3L | 9881502..9881556 | 88..142 | 100 | -> | Minus |
| arm_3L | 9881620..9881677 | 26..87 | 91 | | Minus |
