FMO05335.5prime Sequence
1245 bp (1077 high quality bases) assembled on 2008-08-22
> FMO05335.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAGCTCAA
ATTGAGATAATTCCATGCAAAGTCTGCGGCGACAAGTCATCCGGCGTGCA
TTACGGAGTGATCACCTGCGAGGGCTGCAAGGGATTCTTTCGAAGATCGC
AGAGCTCCGTGGTCAACTACCAGTGTCCGCGCAACAAGCAATGTGTGGTG
GACCGTGTTAATCGCAACCGATGTCAATATTGTAGACTGCAAAAGTGCCT
AAAACTGGGAATGAGCCGTGATGCTGTAAAGTTCGGCAGGATGTCCAAGA
AGCAGCGCGAGAAGGTCGAGGACGAGGTACGCTTCCATCGGGCCCAGATG
CGGGCACAAAGCGACGCGGCACCGGATAGCTCCGTATACGACACACAGAC
GCCCTCGAGCAGCGACCAGCTGCATCACAACAATTACAACAGCGGCGGCT
ACTCCAACAACGAGGTGGGCTACGGCAGTCCCTACGGATACTCGGCCTCC
GTGACGCCACAGCAGACCATGCAGTACGACATCTCGGCGGACTACGTGGA
CAGCACCACCTACGAGCCGCGCAGTACAATAATCGATCCCGAATTTATTA
GTCACGCGGATGGCGATATCAACGATGTGCTGATCAAGACGCTGGCGGAG
GCGCATGCCAACACAAATACCAAACTGGAAGCTGTGCACGACATGTTCCG
AAAGCAGCCGGATGTGTCGCGCATTCTCTACTACAAGAATCTGGGCCAAG
AGGAACTCTGGCTGGACTGCGCCGAGAAGCTTACACAAATGATACAGAAC
ATAATCGAATTTGCTAAGCTCATACCGGGATTCATGCGCCTAAGTCAGGA
CGATCAGATATTACTGCTGAAGACGGGCTCCTTTGAGCTGGCGATTGTTC
GCATGTCCAGACTGCTTGATCTCTCACAGAACGCGGTCTCTACGCGACGT
GATGCTGCCCCAGAGCGTTCTACACATCGACTCGGAAGAAGATGCGTCTG
GTTGTCGCGCATCTTCAAACGGCCAGTCGATAGCCGAACTCAACTGACTG
AAACGAACTGGCGCTTAATCAGAGCTTATGCTGCTTCTGGCAGAACGCCA
TGGAATTGGATGTATTACGAATTACAAAGGCTTTTCAATCTGAACATGAT
GCATTCGCAGAACTGGAAACGATCTGGCCGTAGCCAGTTCGTCTTGAACT
GCTAAACAATATACCAAATTCCCGCGAATTTTCTCCTCTGCGAGT
FMO05335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12912-RB | 6466 | CG12912-RB | 2577..3724 | 38..1172 | 5070 | 97.1 | Plus |
| Hr46-RE | 6385 | CG33183-RE | 2496..3643 | 38..1172 | 5070 | 97.1 | Plus |
| Hr46-RC | 6466 | CG33183-RC | 2577..3724 | 38..1172 | 5070 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10209880..10210111 | 273..42 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 10209440..10209609 | 442..273 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10209101..10209268 | 606..439 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 10208706..10208853 | 857..710 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 10208417..10208646 | 1078..856 | 600 | 94 | Minus |
| 2R | 25286936 | 2R | 10208920..10209025 | 711..606 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:46 has no hits.
FMO05335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:57 Download gff for
FMO05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12912-RB | 2574..3711 | 32..1160 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:46 Download gff for
FMO05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RB | 86..1223 | 32..1160 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:34 Download gff for
FMO05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RC | 2574..3711 | 32..1160 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:34 Download gff for
FMO05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10208401..10208644 | 858..1093 | 93 | <- | Minus |
| 2R | 10208706..10208852 | 711..857 | 100 | <- | Minus |
| 2R | 10208921..10209024 | 607..710 | 100 | <- | Minus |
| 2R | 10209101..10209264 | 443..606 | 100 | <- | Minus |
| 2R | 10209440..10209608 | 274..442 | 100 | <- | Minus |
| 2R | 10209880..10210111 | 42..273 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:57 Download gff for
FMO05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6095906..6096149 | 858..1093 | 93 | <- | Minus |
| arm_2R | 6096211..6096357 | 711..857 | 100 | <- | Minus |
| arm_2R | 6096426..6096529 | 607..710 | 100 | <- | Minus |
| arm_2R | 6096606..6096769 | 443..606 | 100 | <- | Minus |
| arm_2R | 6096945..6097113 | 274..442 | 100 | <- | Minus |
| arm_2R | 6097385..6097616 | 42..273 | 100 | | Minus |
