FMO05336.5prime Sequence
1217 bp (1057 high quality bases) assembled on 2008-08-22
> FMO05336.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTGTCCCTGTA
CGCTACTCCTCTGCTGCCGCCGAATACGCCGCCGAAGTTGATTGTGAGTT
GGAGAGCACTCTGCAACAGCAGCAACAGTTGCACTTGCAACAGCAATACG
AGCAATACCAGCACTACCAGTACCAACGGGAGCAGGATATCGCCTACTAT
TGCCAGTTGCAGGCGGCGCGGCAGCAGGAGCAGTTGATGCAGCAGAGGAC
ATCGATGTCGTCGTCGGTTATGCCAGGCCTAGCCTTGCCCCAGGATCACC
AGGACCACCCAGCCGCCCTTTTGAACGGACCCCACAACAACAACATCGGA
CTCGCCATGGACGCCCACAGCATCAACGCCATTCTGGTCGACGACGAGCA
GCCCTCGACTTCGGCCCAGGCTGCCGCCGCTGCTGCCGCATCCGCGGGTG
GATCTGCTGGTGCGGGATCGGGATCGGGATTGGGTGGTGCTATCGGTGGG
GGCAAGCTGGCCAACGGCATTAACCGCAATGCAGAGATGCCAACTGATTG
GATGAGGATTGCGGACGAGGGCCGGTATGGGACACCGGGTGCTGCTGGCT
TGGAATATCAGAAGTACGAACAACAACAACAACTGGAGGATCTGGCGGAG
TCCGAGGCAGGAGCCGTCGGTGGAGCCAGCAACAACAACGGCGAATCGTC
GTCGTCCTTGAAAAAGCTAGAGGATCAGCTGCACGCCCTCACCTCGGACG
AGTTGTACGAAACCCTCAAGGAGTACGACGTCCTGCAGGACAAGTTCCAC
ACGGTGCTGCTGTTGCCCAAGGAATCAAGGCGTGAGGTTACTGCCGGAGG
ACGAGATGGATCCGCCTACGTGCTGCGCTGCCTGAAGATGTGGTACGAGC
TGCCCTCCGACGTCCTGTTCTCGGCCATGAGCCTGGTGGACCGCTTTCTG
ATCGCATGGCCGTCAAGCGAAGCACATGGCTGCATGAGCGTGGCTCGTTC
ACTGCCATCAGCAGCTGGACTGAAACCCATTCCCGCGAGGATCTGGTACA
AATATCTCAATTGGTTGTACCGCTGGGTGATCTGAAACGCATGGCCGGCG
TGATGCAACAGCTGGCGTTCAGATGGACATGCACCGATACCTTCTGGAGC
TACTGGCAACTAACTAGCCTTCGAAACTGGACAAGAGAGATCCGGCGGGC
AACTTTGCACAGGTCAC
FMO05336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycG-RF | 4450 | CG11525-RF | 119..1252 | 36..1153 | 5100 | 97.7 | Plus |
| CycG-RC | 2687 | CG11525-RC | 517..1650 | 36..1153 | 5100 | 97.7 | Plus |
| CycG-RB | 3132 | CG11525-RB | 962..2095 | 36..1153 | 5100 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31601416..31602210 | 830..36 | 3975 | 100 | Minus |
| 3R | 32079331 | 3R | 31601185..31601352 | 994..830 | 675 | 97.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..7006 | 114..311 | 215 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6861 | 114..244 | 188 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6910 | 114..245 | 173 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2496 | 103..253 | 170 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6840 | 115..244 | 161 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1146 | 114..187 | 158 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6889 | 114..245 | 153 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2380 | 113..187 | 150 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6867 | 114..187 | 147 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2392 | 105..184 | 145 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1162 | 103..185 | 142 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1585 | 114..163 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6903 | 115..190 | 130 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2853 | 111..177 | 128 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6915 | 114..187 | 127 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2870 | 114..179 | 114 | 63.6 | Plus |
FMO05336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:08 Download gff for
FMO05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycG-RB | 963..2108 | 27..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:19:47 Download gff for
FMO05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycG-RB | 963..2108 | 27..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:41 Download gff for
FMO05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycG-RB | 957..2102 | 27..1158 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:41 Download gff for
FMO05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31601112..31601351 | 831..1060 | 94 | <- | Minus |
| 3R | 31601416..31602215 | 27..830 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:08 Download gff for
FMO05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27426834..27427073 | 831..1060 | 94 | <- | Minus |
| arm_3R | 27427138..27427937 | 27..830 | 99 | | Minus |
