FMO05338.5prime Sequence
1238 bp (1065 high quality bases) assembled on 2008-08-22
> FMO05338.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCGCGTT
ACGTGCTGCATCTAAAGCCGATAAGAATTTGCTGCCATTCTTGGGGCAAT
TGTCTCGTAGCCATGCTGCCAAGGCTGCAAAGGCTGCAGCTGCCGCAAAT
GGAAAGATTGTGGCCGTAATTGGTGCAGTCGTCGATGTCCAGTTTGATGA
TAACTTACCGCCCATTCTGAATGCCTTGGAAGTAGACAACCGTTCTCCTC
GGCTCGTGCTAGAGGTGGCCCAGCACTTGGGAGAAAATACCGTGCGCACT
ATCGCCATGGATGGTACCGAAGGCTTGGTTCGCGGACAGAAGGTTCTCGA
TACTGGGTATCCTATCCGAATTCCAGTTGGTGCCGAAACACTAGGACGCA
TCATTAATGTTATTGGTGAACCCATTGATGAGCGTGGACCAATTGATACA
GACAAGACCGCTGCCATTCATGCTGAGGCTCCTGAATTCGTTCAGATGTC
TGTTGAGCAAGAGATTCTTGTCACTGGAATCAAAGTCGTCGATCTCCTGG
CTCCATACGCCAAAGGTGGTAAAATTGGGTTGTTTGGAGGTGCCGGTGTG
GGCAAAACTGTGTTGATCATGGAGCTCATTAACAACGTGGCTAAAGCTCA
TGGTGGATACTCGGTTTTCGCGGGAGTTGGTGAACGCACTCGTGAGGGAA
ACGATTTATACAATGAGATGATCGAGGGTGGTGTTATTTCACTAAAGGAC
AAGACCTCAAAGGTGGCTCTCGTATATGGGCAAATGAACGAGCCGCCAGG
TGCTCGTGCCCGTGTTGCTCTAACTGGACTGACCGTTGCAGAGTACTTCC
GTGATCAAGAGGACAGGATGTGTTGCTGTTTATCGACAACATTTTCCGAT
TTACTCAAGCTGGCTCAGAGTGTCCGCTTTGTTGGGTCGTATTCCCTCAG
CCGTCGGTTACCAGCCACCTTGGCTACCGACATGGGTTCTATGCAGAGCG
TATTACACACAAAAAGGATCAATACTTCTGTTCAGGCATATATGTGCCGC
TGATGATTGACGATCCTGCTCTGCTACTCTCCCTCAATGATGCCACACTG
TACTCTCGGGTGGATGCCGACTGGTATTACCCTGCCTGGAATCCATGATC
GACTCTCGATCTGGGATCCAAACATGCCAGAACATTTACCGTGCTGTGGT
GTCAAATCTATGCCGACTTCATTACTTCGGAAATAACT
FMO05338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPsyn-beta-RD | 2048 | CG11154-RD | 27..1147 | 40..1135 | 4940 | 97.4 | Plus |
| ATPsyn-beta-RA | 1688 | CG11154-RA | 27..1147 | 40..1135 | 4940 | 97.4 | Plus |
| ATPsyn-beta-RC | 2026 | CG11154-RC | 347..1485 | 40..1135 | 4750 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1033271..1033866 | 415..1006 | 2780 | 99.3 | Plus |
| 4 | 1348131 | 4 | 1032907..1033220 | 104..417 | 1570 | 100 | Plus |
| 3L | 28110227 | 3L | 16098790..16099283 | 506..996 | 490 | 74.7 | Plus |
| 4 | 1348131 | 4 | 1031890..1031953 | 40..103 | 320 | 100 | Plus |
| 3R | 32079331 | 3R | 19920789..19920871 | 653..735 | 205 | 83.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:03 has no hits.
FMO05338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:43 Download gff for
FMO05338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-beta-RA | 21..1139 | 33..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:08 Download gff for
FMO05338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-beta-RA | 71..1189 | 33..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:35 Download gff for
FMO05338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPsyn-beta-RA | 21..1139 | 33..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:35 Download gff for
FMO05338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1031876..1031953 | 28..103 | 91 | -> | Plus |
| 4 | 1032907..1033218 | 104..415 | 100 | -> | Plus |
| 4 | 1033272..1034008 | 416..1128 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:43 Download gff for
FMO05338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1052502..1052579 | 28..103 | 91 | -> | Plus |
| arm_4 | 1053533..1053844 | 104..415 | 100 | -> | Plus |
| arm_4 | 1053898..1054634 | 416..1128 | 96 | | Plus |
